Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq42 95.1 9e-15 seq57 93.3 3e-14 >seq42 Length=30274277 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || ||||| ||| ||| || |||| || || ||| | Sbjct 11334750 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATCACCCTTGAAGTTGAGAGCTCA 11334691 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| |||||| ||||| ||||| || ||| |||| || | Sbjct 11334690 GACACCATTGATAAT--GTCAAAGCGAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 11334633 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | || | ||| | ||||| | Sbjct 11334632 AGCAGAGGCTTATATTTGCTGGTAAGCAGCTCGAGGATGGCCGGACATTGGCTGATTATA 11334573 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| |||||| ||| | || |||||| | ||||| | |||||| Sbjct 11334572 ACATCCAGAAAGAGTCCACCCTTCACTTGGTTCTCCGTTTAAGAGGCGGC 11334523 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || || ||||| ||| |||||| |||| || || || | Sbjct 11334522 ATGCAAATTTTTGTGAAGACCCTCACTGGAAAAACTATTACCCTTGAAGTTGAGAGTTCA 11334463 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||| || ||| |||| || | Sbjct 11334462 GACACCATCGATAAT--GTGAAAGCTAAAATCCAGGACAAGGAGGGTATTCCCCCAGACC 11334405 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || ||||| |||| || | || | ||| | || |||| Sbjct 11334404 AGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAAGATGGTCGGACATTGGCGGACTACA 11334345 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| || | || |||||| | |||||| | || ||| Sbjct 11334344 ACATCCAGAAGGAGTCTACCCTTCACTTGGTTCTCCGTTTGAGAGGTGGC 11334295 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 ||||||||||||||||| || |||||||| || ||||| |||| || || || || Sbjct 11481623 ATGCAAATTTTTGTGAAGACCCTTACTGGTAAGACCATTACCCTTGAAGTTGAGAGTTCA 11481682 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| ||||| || || |||| || | Sbjct 11481683 GACACCATCGATAAT--GTTAAAGCGAAAATCCAGGACAAGGAGGGCATTCCCCCAGACC 11481740 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || || || | || || | || | ||| | ||||| | Sbjct 11481741 AGCAGAGGCTCATTTTTGCAGGTAAGCAGCTTGAGGATGGCCGGACATTGGCTGATTATA 11481800 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| |||||| ||| | || |||||| | |||||| | || ||| Sbjct 11481801 ACATCCAGAAAGAGTCCACACTTCACTTGGTTCTCCGTTTGAGAGGTGGC 11481850 >seq57 Length=24021853 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||||||||| || || ||||| | || ||||||||| | Sbjct 5916106 ATGCAGATATTTGTGAAAACTCTTACAGGAAAGACCATTACTTTGGAAGTCGAAAGCTCA 5916165 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| |||| || ||| || || ||||| || ||| |||| ||| | Sbjct 5916166 GACACGATCGACAA--CGTTAAAGCCAAGATCCAGGACAAGGAGGGTATTCCACCGGACC 5916223 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| || || | || || | || | | | ||||||||| Sbjct 5916224 AGCAGAGGCTGATCTTTGCCGGCAAGCAGCTCGAAGATGGGCGAACCCTTGCCGATTACA 5916283 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| |||||| ||| | || ||||| | ||| | ||||| || Sbjct 5916284 ATATCCAGAAAGAGTCAACTCTTCACTTGGTCCTCCGTCTTCGTGGAGG 5916332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || || || || || || | || ||||| ||| || Sbjct 5916562 ATGCAGATTTTTGTAAAAACCCTCACCGGAAAGACCATCACCCTGGAGGTCGAGAGCTCC 5916621 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || ||| || || || || || || |||| || | Sbjct 5916622 GACACCATTGACAAC--GTGAAAGCGAAGATCCAGGATAAGGAGGGCATTCCACCAGACC 5916679 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||| |||||||| || |||| |||| || | | | ||||||||| Sbjct 5916680 AGCAGAGGCTGATTTTCGCCGGAAAGCAGCTGGAAGACGGCCGAACCCTCGCCGATTACA 5916739 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||||||| ||| |||| ||||| | ||| | ||||| || Sbjct 5916740 ACATTCAAAAAGAGTCAACTCTGCACTTGGTGCTCCGTCTTCGTGGAGG 5916788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854129201789