Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07]
1,907 sequences; 486,196,837 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq42 123 2e-23
seq57 98.7 9e-16
seq23 87.8 2e-12
>seq42
Length=30274277
Score = 123 bits (136), Expect = 2e-23
Identities = 177/247 (72%), Gaps = 8/247 (3%)
Strand=Plus/Plus
Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100
|| ||||||| || ||| |||||||| || | ||||| || || ||| |||||| |
Sbjct 11334509 ACAAAAATTTG--CATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCT 11334566
Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160
| || |||||||| || | ||| || | || || ||||| || || ||||||||||| |
Sbjct 11334567 GGATGTTATAATCAGCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCC 11334626
Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220
||||||||| | ||| | | ||| |||||| ||||||| ||||| | | | |
Sbjct 11334627 TCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGG 11334686
Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277
| || ||| ||| || || | |||||| ||||||| || || || || ||||| |
Sbjct 11334687 TGTCTGAGCT---CTCAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAA 11334743
Query 39278 TTTGCAT 39284
|||||||
Sbjct 11334744 TTTGCAT 11334750
Score = 84.2 bits (92), Expect = 2e-11
Identities = 166/243 (68%), Gaps = 2/243 (1%)
Strand=Plus/Plus
Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104
|||| | | || |||||||| || || | || | ||||| ||| ||||||||| ||
Sbjct 11334967 AAATATTTGCATTCCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAAT 11335026
Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164
||||||||||| | || | | || || ||||| || || ||||| || | | ||
Sbjct 11335027 GTTATAATCGGCCAAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTG 11335086
Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTAT 39223
|||||| | ||| | | ||| ||||| |||||| || | | | | | | | ||||
Sbjct 11335087 CTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTT-TGCCTTAACATTGTCAATGGTAT 11335145
Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283
| ||| || || | || || ||||||| || || || ||||||||||| ||||
Sbjct 11335146 CAGAACTCTCAACTTCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCA 11335205
Query 39284 TCT 39286
|||
Sbjct 11335206 TCT 11335208
>seq57
Length=24021853
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||| || || | ||| ||| || || || || || ||||| |||||||| |||| ||
Sbjct 5891114 CACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACCGTCTTC 5891055
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193
||||||||| || || ||||| || | |||||| | ||||||| | || |||||||||
Sbjct 5891054 AAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGG-ATGCCCTCTTTGTCTT 5890996
Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| || |||| | | | ||| ||| ||| || || | || || | |
Sbjct 5890995 GGATCTTGGCCTTGACATTATCGATCGTGTCGGAGCTCTCAACCTCTAGGGTTATGGTCT 5890936
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286
|||| || || |||||||||||||| |||||||
Sbjct 5890935 TTCCGGTAAGTGTTTTAACAAAGATCTGCATCT 5890903
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || |||||| || ||||| ||||||||||| ||||| | || ||
Sbjct 5916314 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 5916255
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || || | ||||||||| | || | | ||| |||||| |
Sbjct 5916254 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 5916195
Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251
|| || | || | ||| | | | ||| || ||| || || |||| || || |
Sbjct 5916194 ATCTT-GGCTTTAACGTTGTCGATCGTGTCTGAGCT---TTCGACTTCCAAAGTAATGGT 5916139
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285
||||| || || ||||| ||||| || ||||||
Sbjct 5916138 CTTTCCTGTAAGAGTTTTCACAAATATCTGCATC 5916105
Score = 82.4 bits (90), Expect = 7e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135
||||| || || || |||||| || ||||| ||||||||||| ||||| | || ||
Sbjct 5891341 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 5891282
Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195
||||| ||||| ||||| || || | ||||||||| | || | | ||| |||||| |
Sbjct 5891281 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 5891222
Query 39196 ATTTT 39200
|| ||
Sbjct 5891221 ATCTT 5891217
>seq23
Length=22385789
Score = 87.8 bits (96), Expect = 2e-12
Identities = 155/221 (70%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || ||||| || ||||| |
Sbjct 4579876 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCC 4579817
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187
||| || |||||||| || || || || ||||||||||||| ||||||| | || || |
Sbjct 4579816 GTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCT 4579758
Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246
||||| ||| || ||| || | | | | || || ||| || || || | ||
Sbjct 4579757 TGTCCTGGATCTTAGCCTTG-GCATTGTCGATGGTGTCAGACGATTCAACCTCTAAGGTT 4579699
Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| | || ||||| || ||||| || ||||| ||||||||
Sbjct 4579698 ATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 4579658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429535616689091
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |