Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq42 123 2e-23 seq57 98.7 9e-16 seq23 87.8 2e-12 >seq42 Length=30274277 Score = 123 bits (136), Expect = 2e-23 Identities = 177/247 (72%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || ||| |||||||| || | ||||| || || ||| |||||| | Sbjct 11334509 ACAAAAATTTG--CATGCCGCCTCTTAAACGGAGAACCAAGTGAAGGGTGGACTCTTTCT 11334566 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || |||||||| || | ||| || | || || ||||| || || ||||||||||| | Sbjct 11334567 GGATGTTATAATCAGCCAATGTCCGGCCATCCTCGAGCTGCTTACCAGCAAATATAAGCC 11334626 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||||||| | ||| | | ||| |||||| ||||||| ||||| | | | | Sbjct 11334627 TCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATTTTCGCTTTGACATTATCAATGG 11334686 Query 39221 TATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 | || ||| ||| || || | |||||| ||||||| || || || || ||||| | Sbjct 11334687 TGTCTGAGCT---CTCAACTTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTCACAAAAA 11334743 Query 39278 TTTGCAT 39284 ||||||| Sbjct 11334744 TTTGCAT 11334750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/243 (68%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||||| || || | || | ||||| ||| ||||||||| || Sbjct 11334967 AAATATTTGCATTCCTCCTCTCAAACGAAGTACAAGGTGTAGGGTGGACTCTTTTTGAAT 11335026 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 ||||||||||| | || | | || || ||||| || || ||||| || | | || Sbjct 11335027 GTTATAATCGGCCAAAGTCCTACCATCCTCGAGCTGCTTTCCAGCAAAAATCAACCTTTG 11335086 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTAT 39223 |||||| | ||| | | ||| ||||| |||||| || | | | | | | | |||| Sbjct 11335087 CTGGTCAGGGGGGATACCCTCCTTGTCTTGGATTTT-TGCCTTAACATTGTCAATGGTAT 11335145 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | ||| || || | || || ||||||| || || || ||||||||||| |||| Sbjct 11335146 CAGAACTCTCAACTTCAAGAGTTATGGTTTTTCCAGTAAGGGTCTTAACAAAGATCTGCA 11335205 Query 39284 TCT 39286 ||| Sbjct 11335206 TCT 11335208 >seq57 Length=24021853 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| || || | ||| ||| || || || || || ||||| |||||||| |||| || Sbjct 5891114 CACTAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGACCGTCTTC 5891055 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||| || || ||||| || | |||||| | ||||||| | || ||||||||| Sbjct 5891054 AAGCTGTTTCCCGGCGAATATCAGCCTCTGCTGATCCGGTGGG-ATGCCCTCTTTGTCTT 5890996 Query 39194 TGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 ||| || |||| | | | ||| ||| ||| || || | || || | | Sbjct 5890995 GGATCTTGGCCTTGACATTATCGATCGTGTCGGAGCTCTCAACCTCTAGGGTTATGGTCT 5890936 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || || |||||||||||||| ||||||| Sbjct 5890935 TTCCGGTAAGTGTTTTAACAAAGATCTGCATCT 5890903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || |||||| || ||||| ||||||||||| ||||| | || || Sbjct 5916314 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 5916255 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || | ||||||||| | || | | ||| |||||| | Sbjct 5916254 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 5916195 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 || || | || | ||| | | | ||| || ||| || || |||| || || | Sbjct 5916194 ATCTT-GGCTTTAACGTTGTCGATCGTGTCTGAGCT---TTCGACTTCCAAAGTAATGGT 5916139 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| || || ||||| ||||| || |||||| Sbjct 5916138 CTTTCCTGTAAGAGTTTTCACAAATATCTGCATC 5916105 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || |||||| || ||||| ||||||||||| ||||| | || || Sbjct 5891341 ACCAAGTGAAGAGTTGACTCTTTCTGGATATTGTAATCGGCAAGGGTTCGCCCATCTTCG 5891282 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || | ||||||||| | || | | ||| |||||| | Sbjct 5891281 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGAATACCCTCCTTGTCCTGG 5891222 Query 39196 ATTTT 39200 || || Sbjct 5891221 ATCTT 5891217 >seq23 Length=22385789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || ||||| | Sbjct 4579876 GCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCC 4579817 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 ||| || |||||||| || || || || ||||||||||||| ||||||| | || || | Sbjct 4579816 GTCCTCCAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCTTCCT 4579758 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||||| ||| || ||| || | | | | || || ||| || || || | || Sbjct 4579757 TGTCCTGGATCTTAGCCTTG-GCATTGTCGATGGTGTCAGACGATTCAACCTCTAAGGTT 4579699 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || ||||| || ||||| || ||||| |||||||| Sbjct 4579698 ATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 4579658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535616689091