Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq42 125 6e-24 >seq42 Length=30274277 Score = 125 bits (138), Expect = 6e-24 Identities = 545/849 (64%), Gaps = 15/849 (2%) Strand=Plus/Plus Query 4277 CTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATT 4336 ||| |||||||| || || || || | ||| || || ||||| | || |||||||| Sbjct 25646673 CTTCTCGAAGAAGTTGGTCTTTCCCTGTAAAGAGATTAGCTCCATCCAGTCGAACGGATT 25646732 Query 4337 AGTTGCGTTGTA-ATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATT 4395 | ||||||| || || || || || | |||| || || || || |||| Sbjct 25646733 CGAAACGTTGTACATCTTCCCGTAACCCAAG-GCGCCGAGCAGGCGATCGGCAACGAATT 25646791 Query 4396 CTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTA-ATCTCACAGGTAGCGCGTAT 4454 | || || |||||||| || | | ||| || || | || | | ||| || | ||||| Sbjct 25646792 CGATGTATTGGCTCATTAGAGCACTGTTCATCCCCACTAGAGCGCAC-GGCAACGCGTCG 25646850 Query 4455 GTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTA 4514 | |||||| ||||||| || | || | || || | || | | | || | Sbjct 25646851 CAGACGAACTCTCTTTCTATATCCACCGAGTCGGCGACGATTGCCTTCACTCTCTCCTCG 25646910 Query 4515 GATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAACCTTC 4573 ||||||| ||||||| | | | || ||||| || || || || || || || Sbjct 25646911 CTCAGTTTATTC-CTAAGTAGGCTGTAGAGCAAGCACGCGAAGTCGCAGTGTAAGCCCTC 25646969 Query 4574 GTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632 ||||| || | || | || || || || |||||||| ||||| | ||| | || || | Sbjct 25646970 GTCTC-GCGAGATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTA 25647028 Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692 |||| ||||| | | || || || ||||| |||||||| ||| ||| || || | Sbjct 25647029 GCCAGAATATCGAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAATGCGA 25647088 Query 4693 CTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTT 4752 | || | || | || ||| |||||| | ||||| | |||| Sbjct 25647089 GCAGGCGTTCGGCAAAGGTTTCGGAGCCGTCG---ATCCATCGGAGAGCCCACTGGGCTT 25647145 Query 4753 TTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGT 4812 | ||| || || || || || | || |||| ||| | | |||| || ||| | Sbjct 25647146 TCTTCGCTACACAGGGGATGGTATCGATTGCGTGAAAGAGCCTGTTTTTCTCCTTTGGAT 25647205 Query 4813 CTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAA 4872 | | ||||| | |||| | || || ||||| || || || || ||||| || |||| Sbjct 25647206 CCTTGATATACGATTCTAACAACAGACTGTACATCTCGGAGTGGATGTTTTCAATGGCAA 25647265 Query 4873 TCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTA 4932 |||||||||| || ||| | ||| || | || || || || || || ||| | Sbjct 25647266 TCTGAAATCCATAGAAGGCACGAGCCTCGGCGACCTGGACCTCCTTCATGAACCTTCCGG 25647325 Query 4933 CTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAA 4992 | | ||||||| || || |||||| || || || || || | | |||| || | Sbjct 25647326 CGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGA 25647385 Query 4993 AGTACTGTTCGTCAGGCT--TAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 ||| || ||||| ||| | || |||| ||| || || || | || | || || Sbjct 25647386 AGTGCTTCTCGTC--GCTGGTGAGGTTTTCCCATTGACGCTGGTCCTGAGAGAGGTCGAC 25647443 Query 5051 TTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATA 5110 ||| || | |||||||||||||| || || || |||||||| ||| | ||||| || Sbjct 25647444 TTCCTCGGCTGTCCAAAACGACGCCTCGGCCTTCTTGTACATTTCCCAGACTTCAGGGTA 25647503 Query 5111 CTGAATCGG 5119 ||||||||| Sbjct 25647504 CTGAATCGG 25647512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427039674700031