Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq42 138 2e-27 seq12 105 9e-18 >seq42 Length=30274277 Score = 138 bits (152), Expect = 2e-27 Identities = 362/547 (66%), Gaps = 14/547 (3%) Strand=Plus/Plus Query 48177 ATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATT 48236 ||||| || || || || || | || ||||| || || ||||| || ||||| ||||| Sbjct 25646980 ATTAACTCATTTGAGAAAGTTAATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATC 25647039 Query 48237 GCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCT 48296 | ||| ||| || ||||| |||||||| ||| || |||||| || | || Sbjct 25647040 GAGCAGAAGCTTCCGGAGAAGAAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCG 25647099 Query 48297 CCGTAACTGGCTTCGTTGT-GT--ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACA 48353 | | || |||| | || ||||| || | ||||| | || |||||| |||| Sbjct 25647100 GCAAA---GGTTTCGGAGCCGTCGATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACA 25647156 Query 48354 CAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAA 48413 || || || || || || || | |||||| |||||| || || ||| || | || Sbjct 25647157 CAGGGGATGGTATCGATTGCGTGAAAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATAC 25647216 Query 48414 GTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCG 48473 | |||| || ||||| ||||| |||||||| || |||||||| || ||||||||||| Sbjct 25647217 GATTCTAACAACAGACTGTACATCTCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCA 25647276 Query 48474 TAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCA 48533 || || | || || | || ||| |||||| | || | | | || | || || Sbjct 25647277 TAGAAGGCACGAGCCTCGGCGACCTGGACCTCCTTCATGAACCTTCCGGCGAGGTTTTCG 25647336 Query 48534 TTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCG 48593 || ||||| ||| ||| || || || || | | ||| | || || | || ||| Sbjct 25647337 AGGACGATTCCGTCAGAAGCGGCGAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCG 25647396 Query 48594 TTGGAAGTCAGTTTATTCCAGTCATTGA----TATCTTTTGATATATCTACTTCTTCAGC 48649 | | || || || |||| |||||| || | || | || ||||| || || Sbjct 25647397 TCGCTGGTGAGGTT-TTCC---CATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGC 25647452 Query 48650 TGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATTGG 48709 ||||||||| || ||||| || || || ||||| | ||| | ||| ||| || || || Sbjct 25647453 TGTCCAAAACGACGCCTCGGCCTTCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGG 25647512 Query 48710 GAAAATA 48716 ||| ||| Sbjct 25647513 GAACATA 25647519 >seq12 Length=21026613 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| |||||||| || || || || ||||||| | |||||| |||| |||| || Sbjct 18117244 CTCCCTTTCATACTGGGTGTACAGATCCACAAATTCTTGACCCCAACAATCAGCCAAACC 18117303 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||| ||||| | || ||||| | |||| || ||||| || |||||| Sbjct 18117304 TGGAGCTTCATTAGGGCAAAACAGGGACCAATGCCCATTACTCTGAACTCTTTCCATAAA 18117363 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||||| ||| |||||| |||||||||||| | ||||| || || Sbjct 18117364 GAGATCAGGTACCCAAAGAGCATAAAATAGATCTCGAGCCCTATGCTCCTC 18117414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| |||| ||| | || | | ||| |||| ||| || Sbjct 18117778 CCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCCA 18117837 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||| |||||||||||| |||||||||||| | || ||||| ||| || || Sbjct 18117838 TTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGAA 18117897 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || || | || || || || Sbjct 18117898 ACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATATT 18117957 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || || ||||| ||||| ||||| || ||| || |||||| Sbjct 18117958 CCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 18117999 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||||||||| || | || || || ||||| || ||||| | ||| | || || | Sbjct 18118193 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 18118252 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||| || || ||||| | ||| |||||||| || | || | |||||| Sbjct 18118253 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 18118311 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| |||||||| ||||| || ||| | || |||| | ||| || | || | Sbjct 18118312 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 18118371 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| |||||||| || | || |||||| | || ||||| || Sbjct 18118372 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCGGTCATAAATGAT 18118419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694652240832480