Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vitis_20vinifera_20[refseq_20GCF_5F000003745.3_202009-12-07] 1,907 sequences; 486,196,837 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12 131 2e-25 seq42 116 5e-21 >seq12 Length=21026613 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||||| ||| | || | | ||| |||| |||||| Sbjct 18117778 CCTCCTTGATCAACATAACGGGCAGTGTCATTGAACACCCGTAGCATAGGAACAATGCCA 18117837 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| |||||||||||| |||||||| ||| || ||| Sbjct 18117838 TTGGATGTCCCATTTGTTCCACGAATATAACTTCCTGTGGCACGAATGTTATGAACAGAA 18117897 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || || ||| | |||||| || | |||||||| || Sbjct 18117898 ACACCAATTCCTCCAGCAGACTTGCTGATAACAGCACACTCCTTTAGAGTGTCATATATT 18117957 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || ||||||||||| ||||| || ||| || |||||| Sbjct 18117958 CCTTCAATACTATCATCTTTCATGCAAATAAGGAAGCAGCTA 18117999 Score = 100 bits (110), Expect = 4e-16 Identities = 118/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTG--TGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| |||||||| || |||| | | || ||||||| | |||||| |||| ||||| Sbjct 18117244 CTCCCTTTCATACTGGGTGTACAGATCCA--CAAATTCTTGACCCCAACAATCAGCCAAA 18117301 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||| |||||| || || | || ||||| | |||| || ||| | || |||| Sbjct 18117302 CCTGGAGCTTCATTAGGGCAAAACAGGGACCAATGCCCATTACTCTGAACTCTTTCCATA 18117361 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 ||||||||||||| ||| |||||| |||||||||||| Sbjct 18117362 AAGAGATCAGGTACCCAAAGAGCATAAAATAGATCTCG 18117399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||||||||| || | || || || |||||||||||||| | ||| | || || | Sbjct 18118193 GTTCCTGCATTGAAAAGAGTGGGTGAAGCATGAGTGAACCAACGCTGAGACATTAAATGG 18118252 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| | | || || || | ||| |||||||| |||| || | |||||| Sbjct 18118253 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATTCCAACAGAAACTCTCATCAA 18118311 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| |||||||| | ||||||| ||| | || |||| | ||| || | || | Sbjct 18118312 CATGTGCTGAGGCCTTTCTACAACCTTCCCTTGAATCTTCAGGAGGTAGGACCTCTCAAG 18118371 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||| | || ||||| || Sbjct 18118372 GGTTTTGAAACCAAAGTAATCATAATCAAAGTCCCGGTCATAAATGAT 18118419 >seq42 Length=30274277 Score = 116 bits (128), Expect = 5e-21 Identities = 379/584 (65%), Gaps = 10/584 (2%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 46686 || || || || || || || | ||| || |||| ||||| || || || || || Sbjct 25646941 AAGCACGCGAAGTCGCAGTGTAAGCCCTCGTCTCGCGAGATTAACTCATTTGAGAAAGTT 25647000 Query 46687 AGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAG 46746 | || ||||| || || || || || ||||| ||||| | ||| ||| || ||| Sbjct 25647001 AATCCCGGCATGAGACCGCGTTTCTTTAGCCAGAATATCGAGCAGAAGCTTCCGGAGAAG 25647060 Query 46747 AATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA 46806 || |||||||| || |||||||||| || | || | | | | | Sbjct 25647061 AAGATGCCTTCCACGCAGGCGAATGCGAGCAGGCGTTCGGCAAAGGTTTCGGAGCCGTCG 25647120 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| | ||||||| | || || ||| |||||| || || || || || || | | Sbjct 25647121 ATCCATCGGAGAGCCCACTGGGCTTTCTTCGCTACACAGGGGATGGTATCGATTGCGTGA 25647180 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 ||||| |||||| || | ||| || | ||| | |||| || ||||| ||||| Sbjct 25647181 AAGAGCCTGTTTTTCTCCTTTGGATCCTTGATATACGATTCTAACAACAGACTGTACATC 25647240 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || ||||||||||| || ||||||||||| || || | || || | | | Sbjct 25647241 TCGGAGTGGATGTTTTCAATGGCAATCTGAAATCCATAGAAGGCACGAGCCTCGGCGACC 25647300 Query 46987 TGTACCTCTGTACAAAATCGTTCAGAC-AAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || ||||| | || | | ||| | | | || || || ||||| ||| ||| || Sbjct 25647301 TGGACCTC-CTTCATGAACCTTCCGGCGAGGTTTTCGAGGACGATTCCGTCAGAAGCGGC 25647359 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 || || || | | ||| | || || | || || ||| | || || || |||| | Sbjct 25647360 GAAGAAGGCAAGGATATGACTGATGAAGTGCTTCTCGTCGCTGGTGAGGTT-TTCC---C 25647415 Query 47106 ATTGA----TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 ||||| || | || | || ||||| || |||||||| || |||||||| || | Sbjct 25647416 ATTGACGCTGGTCCTGAGAGAGGTCGACTTCCTCGGCTGTCCAAAACGACGCCTCGGCCT 25647475 Query 47162 TTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATA 47205 | || ||||| | ||| | ||| | || || ||||| || ||| Sbjct 25647476 TCTTGTACATTTCCCAGACTTCAGGGTACTGAATCGGGAACATA 25647519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712917405426240