Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9 118 1e-21 >seq9 Length=25348792 Score = 118 bits (130), Expect = 1e-21 Identities = 542/852 (64%), Gaps = 17/852 (2%) Strand=Plus/Minus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 || ||||| || || || || |||| | ||||| |||||| ||||||| || || Sbjct 24571614 TTCTCGAAGAAATTTGTCTTCCCCTGCAACGATATCAGCTCCATCCAATCAAATGGGTT- 24571556 Query 16754 GTAGCTGAAAAT-----ATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAA 16808 ||||| || || || |||||||| | | | || ||||| || |||| Sbjct 24571555 ----CTGAACATTGTAAATCTTCCCGTACCCCAAAGCACCCAGCAACCTATCAGCCACAA 24571500 Query 16809 ATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTAC-CGGAAGAGCT 16867 | || || || |||| ||| | || | |||||| || | ||| | || ||| | || Sbjct 24571499 ACTCAATGTACTGGCTCATCAGATCACCGTTCATCCCCACCAGA-GCACACGGCAACGCG 24571441 Query 16868 TCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCC 16927 || || || | ||||||| ||||||| || || || | |||||||||| Sbjct 24571440 TCGCACACGAACTCTCTCTCTATATCAACCGCGTCGCGAACGATTCCCTTAACTCGTTCC 24571381 Query 16928 TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 ||| | | | | | | | | | | || || ||||| ||||| || || ||| Sbjct 24571380 TCGCTCAGCTTCTTCCTCATCAGCGTGTAAAGCAAGCACGCGAAGTCGCAGTGCAAACCC 24571321 Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 ||||||| ||| | ||||| || || || | |||||||||| || || ||||| Sbjct 24571320 TCGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGCCCGGGCATCAACCCGCGCTTCTTC 24571261 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | ||||||||||||| ||| ||| |||||||| || ||||| ||| | || || || Sbjct 24571260 AGCCAAAATATCGCGCAGAAGCTCCCCGAAAAGAAAATCCCCTCCACGCAAGCGAAAGCA 24571201 Query 17108 ATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCT 17167 | || || || ||| ||| || || || ||||| | |||| ||||| Sbjct 24571200 ACCAAACGCTCCGCGAACGATTCGGTGCCGT--CG-ATCCACCGGAGGGCCCATTCGGCC 24571144 Query 17168 TTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGG 17227 || | | ||| | || || ||||| | || | | || || || Sbjct 24571143 TTCTTGGCCACACAAGGGACGGTCTCGATGGCATGGAAAAGCCGGTTCTTCTCGACCGGG 24571084 Query 17228 TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCT 17287 || | ||||| || |||| | ||||| |||||||||||||| || ||||| ||||| Sbjct 24571083 TCTTTGATATAGGTTTCGAGCAAGAGGCTATACATTTCGGAGTGGATATTCTCTATGGCA 24571024 Query 17288 ATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 ||||| || || || ||||| || || || || | ||||| ||| ||| | | Sbjct 24571023 ATCTGGAAGCCATAGAAAGC-GCGAGCCTCTGCGACCTGAACCTCCTTCATGAACCTCCC 24570965 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406 || ||||| || ||||||||||| || || || || || | | |||| ||| Sbjct 24570964 GGCGAGATTCTCCAAAACGATGCCGTCTGAGGCAGCAAAGAAAGCGAGCACATGCGAAAT 24570905 Query 17407 GAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCAC 17466 ||| | || ||||| || || || ||||| | ||| | || | || || Sbjct 24570904 GAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCAGTGACGAACATCCTGAGAGAGGTCGAC 24570845 Query 17467 TTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTA 17526 || |||| |||||| || ||| | || || || ||||| | ||| || | ||| Sbjct 24570844 CTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTA 24570785 Query 17527 TTGTATGGGGAA 17538 ||| || || || Sbjct 24570784 TTGGATCGGAAA 24570773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517514618426520