Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9 105 7e-18 >seq9 Length=25348792 Score = 105 bits (116), Expect = 7e-18 Identities = 379/582 (65%), Gaps = 17/582 (3%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 |||||||||||||| || | || ||||||| ||| | ||||| || ||||| | | Sbjct 24571344 CACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGC 24571285 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGA-CCCCGAAAAGAA 16320 || ||||| || || ||||| | ||| |||||||| ||| | | |||||||||||| Sbjct 24571284 CCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCGC-GCAGAAGCTCCCCGAAAAGAA 24571226 Query 16321 TATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACG 16380 || ||||| || | || ||||| | || || |||||| ||| || | | || Sbjct 24571225 AATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCGAACG----AT-TCGGTGCCG 24571171 Query 16381 --AATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 ||||| | |||||||||| || | | |||| | || || ||||| Sbjct 24571170 TCGATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCA 24571111 Query 16439 TTAAACAATTTCTCTTTTTCCTGA--ATATCGATTATATACGTATCAATCAGTAAACTGT 16496 | | || | || ||| || || | ||||| || || | || | || | Sbjct 24571110 TGGA--AAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTAT 24571053 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| | Sbjct 24571052 ACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTG 24570993 Query 16557 CTATTTGTACTTCC-ACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || || ||| | | || | | || || || ||||| ||||| ||||| Sbjct 24570992 CGACCTGAACCTCCTTCATGAA--CCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGA 24570935 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 |||||||| || || | | ||| |||||| | || ||||| | || || | | Sbjct 24570934 GGCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTC 24570875 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | | ||| | || | || || || || | ||||| ||| ||| | || Sbjct 24570874 CCAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGC 24570815 Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 || || ||||||| ||| || | |||||| || ||||| Sbjct 24570814 TTTCTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAA 24570773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511383785455480