Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 168 8e-37 seq8 113 5e-20 seq2164 107 2e-18 seq5 107 2e-18 >seq9 Length=25348792 Score = 168 bits (186), Expect = 8e-37 Identities = 390/583 (67%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || ||||| |||||||| | ||||||||||| || || ||||| || || || Sbjct 24571348 CAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGT 24571289 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAA 24249 ||| |||||||| | || ||||| || ||||||||||| | |||| | | ||| |||| Sbjct 24571288 GAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCG-CGCAGAAGCTCCCCGAAA 24571230 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG--CGCTGTC 24307 ||||||| || || || || || |||| | | |||| | || || || | Sbjct 24571229 AGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACG--CTCCGCGAACGATTCGGTGCC 24571172 Query 24308 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 24367 | |||||| | ||||| ||||||||||| |||||||| | ||||| || || Sbjct 24571171 GTCGATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGC 24571112 Query 24368 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 24427 || || || ||| || || ||||| | ||| || || | ||| || ||||| Sbjct 24571111 ATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTATA 24571052 Query 24428 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 24487 |||||| || || || || || ||||| || || || || |||||| | |||||| | Sbjct 24571051 CATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGC 24570992 Query 24488 AATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 24547 | ||| || || | || | | || | ||| || || || ||||| ||| Sbjct 24570991 GACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGC 24570932 Query 24548 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCA 24607 ||||| || || | ||||| || || | || ||||| || ||||| || | ||| Sbjct 24570931 AGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCA 24570872 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 | | | ||| | ||| | || || || || | ||||| || || ||||| || || Sbjct 24570871 GTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTT 24570812 Query 24668 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 24710 || ||||| | |||||| | | ||||| || ||||| ||| Sbjct 24570811 CTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACATA 24570769 >seq8 Length=23350829 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 17136278 TCCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 17136219 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| ||||| ||||| || || |||||||||||||| |||||| Sbjct 17136218 ATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGA 17136159 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| ||||| || || || ||| | || ||| || || |||||||| || Sbjct 17136158 GACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATAT 17136099 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 ||| || || |||||||| ||||| Sbjct 17136098 GCCTTCAATGCTATCATCTTTCATG 17136074 >seq2164 Length=5404 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | ||| |||||||| || || ||||| | ||| | | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || |||| |||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | ||| | || ||| | | |||||| | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 54604 AGTTTTAAAACCAAAATA 54621 || ||||||||||| || Sbjct 4646 GGTCTTAAAACCAAAGTA 4663 >seq5 Length=31365312 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| |||||||| | ||| |||||||| || || ||||| | ||| | | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || |||| |||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | ||| | || ||| | | |||||| | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 54604 AGTTTTAAAACCAAAATA 54621 || ||||||||||| || Sbjct 24811734 GGTCTTAAAACCAAAGTA 24811717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593686058340720