Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 7e-11 >seq3 Length=26737297 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || |||||||| || ||||| || || || | | Sbjct 2107272 ATGCAAATTTTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 2107331 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||| || ||||| ||||| | || ||||| Sbjct 2107332 GATACGATAGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGGATACCACCTGATCAG 2107391 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || ||| || ||| |||| ||||| ||| Sbjct 2107392 CAGAGGCTTATCTTTGCAGGAAAGCAGCTCGATGATGGCAGGACTTTGGCAGATTATAAT 2107451 Query 29142 ATTCAGAAGGAATCTACT 29159 || ||||||||||| ||| Sbjct 2107452 ATCCAGAAGGAATCAACT 2107469 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || |||||||| || ||||| || || || | | Sbjct 2755182 ATGCAAATTTTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 2755123 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | || | ||| ||| || ||||| ||||| | || ||||| Sbjct 2755122 GATACGATAGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGGATACCACCTGATCAG 2755063 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || || ||| || ||| |||| ||||| ||| Sbjct 2755062 CAGAGGCTTATCTTTGCAGGAAAGCAGCTCGATGATGGCAGGACTTTGGCAGATTATAAT 2755003 Query 29142 ATTCAGAAGGAATCTACT 29159 || ||||||||||| ||| Sbjct 2755002 ATCCAGAAGGAATCAACT 2754985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428310999767795