Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq256 113 7e-20 seq3 86.0 9e-12 seq12 84.2 3e-11 >seq256 Length=127809 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||| || | ||| || || || || ||||||||| Sbjct 84784 GTTCCTCCCCTAAGCCTCAAGACCAGGTGAAGAGTCGACTCCTTTTGGATGTTATAATCT 84843 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| || ||||| || |||||||||||||||||||| ||||| ||| Sbjct 84844 GCAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCAGGA 84903 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| ||||| || Sbjct 84904 GGGATGCCTTCCTTATCCTG 84923 >seq3 Length=26737297 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| ||||| ||||| || ||||||||||||| Sbjct 2107498 CCACCACGAAGGCGCAGTACAAGATGCAAAGTTGATTCCTTCTGGATATTATAATCTGCC 2107439 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| |||| |||||| | || ||||| ||||| || | || |||||||| || || Sbjct 2107438 AAAGTCCTGCCATCATCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGATCAGGTGGT 2107379 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 2107378 ATCCCTTCCTTATCCTG 2107362 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| ||||| ||||| || ||||||||||||| Sbjct 2754956 CCACCACGAAGGCGCAGTACAAGATGCAAAGTTGATTCCTTCTGGATATTATAATCTGCC 2755015 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| |||| |||||| | || ||||| ||||| || | || |||||||| || || Sbjct 2755016 AAAGTCCTGCCATCATCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGATCAGGTGGT 2755075 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| ||||| || Sbjct 2755076 ATCCCTTCCTTATCCTG 2755092 >seq12 Length=19346091 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || ||||| || ||||| ||||| | |||||| | || || || Sbjct 17381702 ACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCAAGAGTCCGGCCGTCCTCA 17381643 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| || || ||||| || ||||||||||||||||| ||||| || || || Sbjct 17381642 AGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTG 17381584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743481890650880