Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq10 118 7e-22 seq1 102 5e-17 seq38 89.7 3e-13 seq9 89.7 3e-13 seq12 84.2 1e-11 seq3 82.4 5e-11 >seq10 Length=20983256 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||||| ||||||||||| | || ||| ||||| || |||||||||| Sbjct 6074304 TCCTCCCCTCAGCCGAAGCACCAGGTGGAGGGTCGATTCCTTCTGGATATTGTAGTCGGC 6074245 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | ||| || || ||||| ||||||| ||||||||| || Sbjct 6074244 GAGAGTACGGCCGTCCTCGAGCTGTTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGG 6074185 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | || | | || | ||| | ||| || || Sbjct 6074184 GATTCCTTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTATCCGACGACTCAAC 6074125 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | || ||||| || || || || |||||||| ||||||||||||| Sbjct 6074124 CTCTAAGGTTATGGTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCG 6074075 >seq1 Length=42390363 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||||||| | || || ||||| ||||||||||| | Sbjct 34329591 TCCACCACGGAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 34329532 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| |||| || | |||||| || ||||| || |||| |||||||| || Sbjct 34329531 GAGTGTACGGCCGTCTTCGAGCTGCTTCCCGGCGAAGATCAGCCTTTGCTGGTCTGGTGG 34329472 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || ||||| ||| | || | || | |||| ||| || Sbjct 34329471 GATGCCTTCCTTATCTTGAATCTTGGCCTTAACATTATCGATGGTGTCGGAGCTTTCCAC 34329412 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||| || ||||||||||| ||||||||||||||||||||| Sbjct 34329411 CTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATC 34329363 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || | | |||| Sbjct 34329803 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGCCGTCC 34329744 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||| ||||||| ||||||||| || | | ||||||||| Sbjct 34329743 TCAAGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT 34329684 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| |||||| |||| || |||||| Sbjct 34329683 TGAATCTTGGCCTTCACGTTGTCAATAGTGTCGGAACTTTCGACCTCCAGAGTAATGGTT 34329624 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || |||||||| ||||| Sbjct 34329623 TTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 34329592 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| || ||||| || | || ||| | || || | ||| ||||| ||||| Sbjct 31833665 TCCTTCTGGATATTGTAATCAGCGAGGGTACGCCCATCCTCGAGCTGTTTGCCAGCGAAG 31833606 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| ||||||||| || | || |||||||| ||||| ||| | | | Sbjct 31833605 ATGAGCCTCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTG 31833546 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||||| |||| |||||||| |||||||||||||| || || Sbjct 31833545 TCGATGGTGTCGGAGCTCTCGACCTCCAGAGTGATGGTCTTGCCGGTGAGAGTCTTGACG 31833486 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 31833485 AAGATCTGCAT 31833475 >seq38 Length=323574 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||||||| || ||||| | ||| ||| ||||| || ||||| |||| Sbjct 34427 CCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCA 34368 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| ||||| || || || ||||| || || ||||||||||| || Sbjct 34367 AGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 34308 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||| || ||||| | | | | || | |||| || || Sbjct 34307 ATACCTTCCTTGTCCTGGATC-TTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAAC 34249 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || ||||||||||| ||||| ||||| ||||| Sbjct 34248 TTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAGATTTGCAT 34201 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||||||| || ||||| | ||| ||| ||||| || ||||| || | Sbjct 52693 CCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCTGCA 52634 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || ||||| ||||| || ||||| || || ||||||||||| || Sbjct 52633 AGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAGGA 52574 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||| || ||||| | | | | || | ||||| || || Sbjct 52573 ATACCTTCCTTGTCCTGGATC-TTGGCTTTGACGTTGTCGATGGTATCGGAGCTCTCAAC 52515 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || ||||||||||| ||||| || || ||||| Sbjct 52514 TTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAAATTTGCAT 52467 >seq9 Length=25348792 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| |||| || | | | || |||| ||||| |||||||| Sbjct 3789880 TCCTTCTGGATGTTGTAATCGGCTAGGGTTCTGCCATCTTCCAGTTGCTTCCCTGCGAAT 3789821 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||||||||||||| || | | |||||||| ||||| ||| | || Sbjct 3789820 ATCAGCCGCTGCTGGTCCGGCGGTATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTA 3789761 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| ||||| || | ||| || || || || || || |||||||| Sbjct 3789760 TCGATGGTGTCCGACGACTCGACCTCTAGCGTTATTGTCTTACCCGTCAGGGTTTTCACG 3789701 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 3789700 AAGATCTGCATC 3789689 >seq12 Length=19346091 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||||||| || ||||| | ||| ||| ||||| || ||||| |||| Sbjct 17382176 CCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCA 17382117 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| ||||| || || || ||||| || || ||||||||||| || Sbjct 17382116 AGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 17382057 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||| || ||||| | | | | || | |||| || || Sbjct 17382056 ATACCTTCCTTGTCCTGGATC-TTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCAAC 17381998 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||| || ||||||||||| || || ||||| ||||| Sbjct 17381997 TTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 17381950 >seq3 Length=26737297 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || ||| || || || || ||||| ||| ||||| |||||||| || | Sbjct 2107043 TCCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGC 2106984 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || |||| |||||| || ||||| || |||| |||||| || ||| Sbjct 2106983 AAGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGGG 2106924 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| |||||| ||| | || | | || | ||| | || || Sbjct 2106923 AATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCAC 2106864 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || || || || ||||| |||||||| Sbjct 2106863 CTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCAT 2106816 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | || ||| || || || || ||||| ||| ||||| |||||||| || | Sbjct 2755411 TCCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGC 2755470 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || |||| |||||| || ||||| || |||| |||||| || ||| Sbjct 2755471 AAGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGGG 2755530 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| ||||| |||||| ||| | || | | || | ||| | || || Sbjct 2755531 AATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCAC 2755590 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| || || || || || ||||| |||||||| Sbjct 2755591 CTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCAT 2755638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323053143599840