Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2164 89.7 1e-12 seq5 89.7 1e-12 >seq2164 Length=5404 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||| ||||| ||| || || ||||||| || || ||| | ||| | Sbjct 4678 GATTTTGAATATGATTACTTTGGTTTTAAGACCCTGGAGAGGTCCTACCTCTTAAAAGTA 4619 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | |||||||||||| ||| | || |||| ||||||||| Sbjct 4618 CAAGGGAAGGTTGTTGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGGATTCAC 4559 Query 248929 AAGGATGACATAGA 248942 |||||||| || || Sbjct 4558 AAGGATGATATTGA 4545 >seq5 Length=31365312 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 ||||| || || |||| ||||| ||| || || ||||||| || || ||| | ||| | Sbjct 24811702 GATTTTGAATATGATTACTTTGGTTTTAAGACCCTGGAGAGGTCCTACCTCTTAAAAGTA 24811761 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | || ||| | |||||||||||| ||| | || |||| ||||||||| Sbjct 24811762 CAAGGGAAGGTTGTTGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGGATTCAC 24811821 Query 248929 AAGGATGACATAGA 248942 |||||||| || || Sbjct 24811822 AAGGATGATATTGA 24811835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073700514700352