Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq256 86.0 5e-12 seq38 82.4 6e-11 seq12 82.4 6e-11 >seq256 Length=127809 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | |||| |||||| || || || ||||| ||||| || || || Sbjct 84786 TCCTCCCCTAAGCCTCAAGACCAGGTGAAGAGTCGACTCCTTTTGGATGTTATAATCTGC 84845 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | |||||||||||| || || ||| | || | |||||||||||| || Sbjct 84846 AAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCAGGAGG 84905 Query 18218 CACGCCTTCCTTATC 18232 | |||||||||||| Sbjct 84906 GATGCCTTCCTTATC 84920 >seq38 Length=323574 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||| || || || ||||||||||| | || | | ||| Sbjct 34641 AAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCGAGAGTCCTTCCATC 34582 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||| ||||| ||| |||| || | || || ||| || | ||||||||| || Sbjct 34581 CTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC 34522 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | | || ||||| | ||| ||||| | |||| || | ||||| Sbjct 34521 CTGAATCT-TGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGAGTGATTG 34463 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || || ||||| |||||||| Sbjct 34462 TCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 34429 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||| || || || ||||||||||| | || | | ||| Sbjct 52907 AAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCGAGAGTCCTTCCATC 52848 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||| ||||| ||| |||| || | || || ||| || | ||||||||| || Sbjct 52847 CTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC 52788 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | | || ||||| | ||| ||||| | |||| || | ||||| Sbjct 52787 CTGAATCT-TGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGAGTGATTG 52729 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || || ||||| |||||||| Sbjct 52728 TCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 52695 >seq12 Length=19346091 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| || || || ||||| || || || ||||||||||| | || | | ||| Sbjct 17399638 AAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCGAGAGTCCTTCCATC 17399579 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||| ||||| ||| |||| || | || || ||| || | ||||||||| || Sbjct 17399578 CTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC 17399519 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | | || ||||| | ||| ||||| | |||| || | ||||| Sbjct 17399518 CTGAATCT-TGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAGAGTGATCG 17399460 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || || ||||| |||||||| Sbjct 17399459 TCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 17399426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379321859231805