Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 163 4e-35 seq8 109 7e-19 seq2164 107 3e-18 seq5 107 3e-18 >seq9 Length=25348792 Score = 163 bits (180), Expect = 4e-35 Identities = 390/585 (67%), Gaps = 10/585 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || ||||| |||||||| | ||||||||||| || || ||||| || || || Sbjct 24571348 CAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGT 24571289 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAA 36272 ||| |||||||| | || ||||| || ||||||||||| | |||| | | ||| |||| Sbjct 24571288 GAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCG-CGCAGAAGCTCCCCGAAA 24571230 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTG 36328 ||||||| || || || || || |||| | | ||| | ||| ||| | | Sbjct 24571229 AGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCG-AACGATTCGGTGCCG 24571171 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 || |||||| | ||||| ||||||||||| |||||||| | ||||| || Sbjct 24571170 TCG---ATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATG 24571114 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 |||| || || ||| || || ||||| | ||| || || | ||| || ||| Sbjct 24571113 GCATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTA 24571054 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || || || || || ||||| || || || || |||||| | |||||| Sbjct 24571053 TACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCT 24570994 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | | ||| || || | || | | || | ||| || || || ||||| | Sbjct 24570993 GCGACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAG 24570934 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 || ||||| || || | ||||| || || | || |||| || ||||| || | | Sbjct 24570933 GCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCC 24570874 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | | | ||| | ||| | || || || || | ||||| || || ||||| || Sbjct 24570873 CAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCT 24570814 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 || || ||||| | |||||| | | ||||| || ||||| ||| Sbjct 24570813 TTCTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACATA 24570769 >seq8 Length=23350829 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 17136278 TCCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 17136219 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 ||||||||| ||||| ||||| ||||| || || | |||||||||||| |||||| Sbjct 17136218 ATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGA 17136159 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| || || || || || ||| | || ||| || || |||||||| || Sbjct 17136158 GACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATAT 17136099 Query 66395 GCCCTCTATACTATCATCCATCATG 66419 ||| || || |||||||| ||||| Sbjct 17136098 GCCTTCAATGCTATCATCTTTCATG 17136074 >seq2164 Length=5404 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | ||| |||||||| || || ||||| | ||| | | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || |||| ||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | ||| | || ||| || | |||||| | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 66635 AGTTTTAAAACCAAAATA 66652 || ||||||||||| || Sbjct 4646 GGTCTTAAAACCAAAGTA 4663 >seq5 Length=31365312 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| |||||||| | ||| |||||||| || || ||||| | ||| | | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || |||| ||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||||||||| |||||||| | ||| | || ||| || | |||||| | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 66635 AGTTTTAAAACCAAAATA 66652 || ||||||||||| || Sbjct 24811734 GGTCTTAAAACCAAAGTA 24811717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658133400130760