Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 6e-12 seq12 84.2 2e-11 seq1 84.2 2e-11 >seq3 Length=26737297 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| ||||| |||||||| ||| || |||| | || || || || || || ||| | Sbjct 2107691 CTCCTTTTGGATGTTATAGTCGGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAA 2107632 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 || || | |||||||| ||||| || || |||||||| |||||| || | | Sbjct 2107631 AATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATT 2107572 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | |||||| | ||||||||||| || | || ||||| |||| ||||| || Sbjct 2107571 GTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCAC 2107512 Query 139753 GAATATTTGCAT 139764 || |||||||| Sbjct 2107511 AAAAATTTGCAT 2107500 >seq12 Length=19346091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | |||| ||| | || ||||| || ||||||||||||||| Sbjct 17399880 CCACCACGAAGACGAAGGACTAGGTGGAGGGTCGACTCCTTCTGAATGTTATAATCGGCA 17399821 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || | ||| || |||||| |||| || || |||||||| || || Sbjct 17399820 AGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAAGATGAGGCGCTGCTGATCCGGTGGA 17399761 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| | || | ||| | | || | || || | | |||||| Sbjct 17399760 ATACCCTCCTTGTC-CTGAATCTTAGCTTTCACATTGTCAATGGTATCCGAGCTCTCCAC 17399702 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| || |||| || || ||||| || ||||| Sbjct 17399701 CTCCAGAGTGATCGTCTTCCCAGTCAGGGTCTTCACGAAGATCTGCAT 17399654 >seq1 Length=42390363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || | ||| | |||||||||||| || || Sbjct 34329560 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTACGGCCGTCTTCGAGCTGCTTCCCG 34329501 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | |||||| || || || |||||||| || || ||| | || | || Sbjct 34329500 GCGAAGATCAGCCTTTGCTGGTCTGGTGGGATGCCTTCCTTATC-TTGAATCTTGGCCTT 34329442 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||||||| | |||||||| | ||| | ||||||||||| | || Sbjct 34329441 AACATTATCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATTGTCTTGCCGGTGAGGGT 34329382 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || || ||||| Sbjct 34329381 TTTCACAAAGATCTGCAT 34329364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496034304368800