Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 185 1e-41 seq8 118 2e-21 seq2164 107 3e-18 seq5 107 3e-18 seq7 89.7 7e-13 >seq9 Length=25348792 Score = 185 bits (204), Expect = 1e-41 Identities = 391/581 (67%), Gaps = 2/581 (0%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 ||| || ||||| |||||||||| ||||||||||| || | ||||| || || || Sbjct 24571348 CAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGT 24571289 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| |||||||| | || ||||| || ||||||||||| | |||| || ||| |||| Sbjct 24571288 GAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCG-CGCAGAAGCTCCCCGAAA 24571230 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 |||| || || || || || || ||||| | | ||| | | || || | | Sbjct 24571229 AGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCGAACGATTCGGTGCCGT 24571170 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 |||||| | ||||| ||||||||||| |||||||| | || || ||||||| Sbjct 24571169 CGATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCAT 24571110 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 || || ||| || || ||||| | ||| || |||| ||| || ||||||| Sbjct 24571109 GGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTATACA 24571050 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 50314 |||| || || || || || ||||| ||||| || || |||||| | |||||| | | Sbjct 24571049 TTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGCGA 24570990 Query 50315 TCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 50374 ||| || || | || | | || | ||| || || || ||||| ||| | Sbjct 24570989 CCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCAG 24570930 Query 50375 CAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAAT 50434 |||| || || | ||||| || || || || |||| ||| ||||| || | ||| | Sbjct 24570929 CAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCAGT 24570870 Query 50435 CATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 50494 | | ||| | ||| | || || || || | ||||| || || ||||| || || | Sbjct 24570869 GACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTCT 24570810 Query 50495 TATACATATTCCAGATGTCATGATATTGGATTGGGAAAATA 50535 | ||||| | |||||| | | |||||||| || || ||| Sbjct 24570809 TGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACATA 24570769 >seq8 Length=23350829 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 17136278 TCCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 17136219 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||||||||| ||||| ||||| ||||| || || |||||||||||||| |||||| Sbjct 17136218 ATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGA 17136159 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || || || || ||| | || ||| || || |||||||| || Sbjct 17136158 GACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATAT 17136099 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||| || ||||||||||| ||||| Sbjct 17136098 GCCTTCAATGCTATCATCTTTCATG 17136074 >seq2164 Length=5404 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| |||||||| | ||| |||||||| || || ||||| | ||||| | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || |||| ||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| | || ||| || | ||| || | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 80514 AGTTTTAAAACCAAAATA 80531 || ||||||||||| || Sbjct 4646 GGTCTTAAAACCAAAGTA 4663 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 4121 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 4180 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| || || ||||||| ||||| | ||| Sbjct 4181 ATTCGATGTCCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATATTTTGAGCTGA 4240 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| ||||| ||||| || ||| | || ||| || || || ||||| || Sbjct 4241 TACACCAATTCCTCCTGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTGTCATATAT 4300 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 ||| || ||||||||||| ||||| Sbjct 4301 GCCTTCAATGCTATCATCTTTCATG 4325 >seq5 Length=31365312 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| |||||||| | ||| |||||||| || || ||||| | ||||| | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || |||| ||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| | || ||| || | ||| || | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 80514 AGTTTTAAAACCAAAATA 80531 || ||||||||||| || Sbjct 24811734 GGTCTTAAAACCAAAGTA 24811717 >seq7 Length=27644224 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 |||||| | ||| || ||||| |||||||| ||||| |||||| ||| || || || | Sbjct 22709641 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22709698 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 | || || || || ||||| | ||| | |||||||||||||||||||| Sbjct 22709699 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGG 22709746 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 49949 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 50008 |||||| | ||| || ||||| |||||||| ||||| |||||| ||| || || || | Sbjct 22995875 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22995818 Query 50009 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 50056 | || || || || ||||| | ||| | |||||||||||||||||||| Sbjct 22995817 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGG 22995770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718225802633960