Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq38 118 8e-22 seq12 113 3e-20 seq3 104 2e-17 seq4 95.1 9e-15 >seq38 Length=323574 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || || | || | |||| |||| ||||| || | ||||||||||| Sbjct 34428 GCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGC 34369 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| ||||||||||| || || || |||| ||||| || || | || Sbjct 34368 AAGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 34309 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || |||| ||||||| || | | |||||| ||| ||| | Sbjct 34308 AATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCG-GAGCTCTCAA 34250 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| ||||| || |||||||| ||||| ||||| || |||||||| Sbjct 34249 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAGATTTGCAT 34201 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || || | || | |||| |||| ||||| || | ||||||||| | Sbjct 52694 GCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCTGC 52635 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || |||||||| || || || || |||| ||||| || || | || Sbjct 52634 AAGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAGG 52575 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || |||| ||||||| || | | || ||| ||| ||| | Sbjct 52574 AATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTATCGG-AGCTCTCAA 52516 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| ||||| || |||||||| ||||| ||||| ||||||||||| Sbjct 52515 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAAATTTGCAT 52467 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||| ||| | || ||||| || | ||||||||||| Sbjct 52237 CCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCA 52178 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||| ||||| || ||||| | ||| ||||| | || Sbjct 52177 AGAGTCCGGCCGTCCTCGAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGATCCGGAGGA 52118 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| | || || || | | |||||| ||| |||||| Sbjct 52117 ATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCG-GAGCTCTCGAC 52059 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| |||||||| ||||| || || || |||||| Sbjct 52058 CTCCAAAGTAATTGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCATT 52010 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||| | || ||||| || | |||||| |||| | || | | | || || Sbjct 34638 CACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCGAGAGTCCTTCCATCCTC 34579 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 |||||| ||||||||||| |||| ||||| || || | || | ||||| || || || Sbjct 34578 CAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CT 34520 Query 43020 G-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTT 43077 | ||| ||||||| || ||| |||||| ||| |||||| || | || || || Sbjct 34519 GAATCTTGGCTTTGACGTTGTCAATGGTGTCG-GAGCTCTCGACCTCCAGAGTGATTGTC 34461 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || | || || ||||| |||||||| Sbjct 34460 TTTCCTGTCAACGTCTTGACAAAGATTTGCAT 34429 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||| | || ||||| || | |||||| |||| | || | | | || || Sbjct 52904 CACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCGAGAGTCCTTCCATCCTC 52845 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 |||||| ||||||||||| |||| ||||| || || | || | ||||| || || || Sbjct 52844 CAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CT 52786 Query 43020 G-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTT 43077 | ||| ||||||| || ||| |||||| ||| |||||| || | || || || Sbjct 52785 GAATCTTGGCTTTGACGTTGTCAATGGTGTCG-GAGCTCTCGACCTCCAGAGTGATTGTC 52727 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| || | || || ||||| |||||||| Sbjct 52726 TTTCCTGTCAACGTCTTGACAAAGATTTGCAT 52695 >seq12 Length=19346091 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || || | || | |||| |||| ||||| || | ||||||||||| Sbjct 17382177 GCCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGC 17382118 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || |||| ||||||||||| || || || |||| ||||| || || | || Sbjct 17382117 AAGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGG 17382058 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||| || || |||| ||||||| || | | |||||| ||| ||| | Sbjct 17382057 AATACCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCG-GAGCTCTCAA 17381999 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||| ||||| || |||||||| ||||| || || || |||||||| Sbjct 17381998 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 17381950 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| | | |||| ||| | || ||||| || | ||||||||||| Sbjct 17381720 CCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCA 17381661 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||| ||||| || ||||| | ||| ||||| | || Sbjct 17381660 AGAGTCCGGCCGTCCTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGA 17381601 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| | ||||| || | | |||||| ||| |||||| Sbjct 17381600 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCG-GAGCTCTCGAC 17381542 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || |||||||| |||||||| ||||| || || || |||||| Sbjct 17381541 CTCCAAAGTAATAGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCATT 17381493 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || | ||| | | ||||||||| | || ||||| || | |||||| |||| Sbjct 17399653 GCCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGC 17399594 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || |||||||| ||||||||||| |||| ||||| || || | || Sbjct 17399593 GAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 17399534 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCG 43059 | ||||| || || ||| ||| ||||||| || ||| |||||| ||| |||| Sbjct 17399533 GATGCCTTCCTTGTC-CTGAATCTTGGCTTTGACGTTGTCAATGGTGTCG-GAGCTCTCG 17399476 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || || ||||| || | || || ||||| |||||||| Sbjct 17399475 ACCTCCAGAGTGATCGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 17399426 >seq3 Length=26737297 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||| | |||| || ||||||||||| | || || |||| | Sbjct 2107726 CCTCCACGAAGGCGGAGCACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAGTCGGCC 2107667 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||| |||||||||||||| | | ||| ||||| | || Sbjct 2107666 AGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAGGG 2107607 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | | || || || | | |||||| | ||| || Sbjct 2107606 ATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACC 2107547 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || ||||||||||||||||||||||| Sbjct 2107546 TCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCACAAAAATTTGCAT 2107500 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||| | |||| || ||||||||||| | || || || | | Sbjct 2754728 CCTCCACGAAGGCGGAGCACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAGTCAGCC 2754787 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| ||| |||||||||||||| | | ||| ||||| | || Sbjct 2754788 AGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAGGG 2754847 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | | || || || | | |||||| | ||| || Sbjct 2754848 ATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACC 2754907 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || ||||||||||||||||||||||| Sbjct 2754908 TCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCACAAAAATTTGCAT 2754954 >seq4 Length=30445767 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 |||| ||| | ||| |||||| || | ||||| | || ||| || || |||| ||| Sbjct 3595643 ACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTTGGCCAAAGTCCGGCCGTCCTCC 3595584 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | ||||| ||||| || || | |||||||||||| | || | ||||| || || Sbjct 3595583 AGCTGTTTTCCGGCGAAGATGAGTCGCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGT 3595524 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | |||| || || | | ||||| | ||| || |||| ||||| || || Sbjct 3595523 ATCTTCGCTTTCACGTTGTCGATGGTGTCCGACGACTCAACCTCTATGGTTATGGTCTTG 3595464 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAA 43117 || || || |||||||| ||||||||||| ||| || Sbjct 3595463 CCCGTAAGGGTTTTCACGAAAATTTGCATGATCTCAA 3595427 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | ||||| | || ||| || || |||| |||| ||||| ||||| || Sbjct 2276511 CTCCTTCTGAATGTTGTAGTTGGCCAAAGTCCGGCCGTCCTCCAGCTGTTTTCCGGCGAA 2276452 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 || | |||||||||||| | | | ||||| || || ||| | |||| || | Sbjct 2276451 GATGAGTCGCTGTTGATCAGGAGAAATTCCTTCCTTGTCTTGTATCTTCGCTTTCACGTT 2276392 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | ||||| | ||| || |||| ||||| || || || || || |||||||| Sbjct 2276391 GTCGATGGTGTCCGACGACTCAACCTCTATGGTTATGGTCTTGCCCGTAAGGGTTTTCAC 2276332 Query 43098 AAAAATTTGCATTTTCTTAA 43117 ||||||||||| ||| || Sbjct 2276331 GAAAATTTGCATGATCTCAA 2276312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381347341005762