Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 158 2e-33 seq8 104 3e-17 seq2164 102 1e-16 seq5 102 1e-16 seq7 86.0 8e-12 >seq9 Length=25348792 Score = 158 bits (174), Expect = 2e-33 Identities = 389/585 (66%), Gaps = 10/585 (2%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 ||| || ||||| |||||||||| |||||| |||| || || ||||| || || || Sbjct 24571348 CAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGT 24571289 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAA 42179 ||| |||||||| | || ||||| || ||||||||||| | |||| | | ||| |||| Sbjct 24571288 GAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCG-CGCAGAAGCTCCCCGAAA 24571230 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTG 42235 |||| || || || || || || |||| | | ||| | ||| ||| | | Sbjct 24571229 AGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCG-AACGATTCGGTGCCG 24571171 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 || |||||| | ||||| ||||||||||| |||||||| | || || ||| Sbjct 24571170 TCG---ATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATG 24571114 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||| || || ||| || || ||||| | ||| || |||| ||| || ||| Sbjct 24571113 GCATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTA 24571054 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 |||||||| || || || || || ||||| ||||| || || |||||| | ||||| Sbjct 24571053 TACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCT 24570994 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | ||||| || || | || | | || | ||| || || || ||||| | Sbjct 24570993 GCGACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAG 24570934 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTC 42535 || ||||| || || | ||||| || || | || ||||| || |||| || | | Sbjct 24570933 GCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCC 24570874 Query 42536 CAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCC 42595 || | | | ||| | ||| | || || || || | ||||| || || || || || Sbjct 24570873 CAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCT 24570814 Query 42596 TTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATA 42640 || || ||||| | |||||| | | ||||| || || || ||| Sbjct 24570813 TTCTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACATA 24570769 >seq8 Length=23350829 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 17136278 TCCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 17136219 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||||| ||||| ||||| ||||| || || ||||||||||||| |||||| Sbjct 17136218 ATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGA 17136159 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| || || || || || ||| | || ||| || || |||||||| || Sbjct 17136158 GACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATAT 17136099 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||| || || |||||||| ||||| Sbjct 17136098 GCCTTCAATGCTATCATCTTTCATG 17136074 >seq2164 Length=5404 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | ||| |||||||| || || ||||| | ||||| | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| ||| | || || ||||| | ||| || || || || | || | |||||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||| |||||||| | ||| | || ||| || | |||||| | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 72597 AGTTTTAAAACCAAAATA 72614 || ||||||||||| || Sbjct 4646 GGTCTTAAAACCAAAGTA 4663 >seq5 Length=31365312 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | ||| |||||||| || || ||||| | ||||| | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| ||| | || || ||||| | ||| || || || || | || | |||||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||| |||||||| | ||| | || ||| || | |||||| | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 72597 AGTTTTAAAACCAAAATA 72614 || ||||||||||| || Sbjct 24811734 GGTCTTAAAACCAAAGTA 24811717 >seq7 Length=27644224 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/106 (78%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 |||||| | ||| || ||||| |||||||| |||||||||||| ||| | || || | Sbjct 22709641 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22709698 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 42159 | || || || || ||||| | ||| | |||||||||||||||||| Sbjct 22709699 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATAT 22709744 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/106 (78%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 42054 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGG 42113 |||||| | ||| || ||||| |||||||| |||||||||||| ||| | || || | Sbjct 22995875 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22995818 Query 42114 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 42159 | || || || || ||||| | ||| | |||||||||||||||||| Sbjct 22995817 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATAT 22995772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671099023929640