Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 120 5e-22 >seq9 Length=25348792 Score = 120 bits (132), Expect = 5e-22 Identities = 587/906 (65%), Gaps = 51/906 (6%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||| || | | || |||||||||||||| || || |||||||||| | Sbjct 24570771 TGTTTCCGATCCAATACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAGGCCTCCTTCT 24570830 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACG--ATTGGGAGACTCGTTTGAC 125113 |||| | ||| |||||||| || || |||| ||| || | ||||| | | | || Sbjct 24570831 GGACCGCCGAGGAGGTCGACCTCTCTCAGGA--TGTTCGTCACTGGGAAAACC---TAAC 24570885 Query 125114 TGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATG 125169 | || ||||| || || ||||| | | || |||||||| | ||| || | Sbjct 24570886 CC---CCGA-CGAGAAGCACTTCATTTCGCATGTGCTCGCTTTCTTTGCTGCCTCAGACG 24570941 Query 125170 GAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTG 125228 | ||||| || ||||| | | | | ||| | ||| | | |||||| Sbjct 24570942 GCATCGTTTTGGAGAATCTCGCCGGGAGG-TTCATGAAGGAGGTTCAGGTCGCAGAGGC- 24570999 Query 125229 TCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTA----CT 125283 ||| ||||| || || ||||| || || ||||| | ||||| |||||||| || Sbjct 24571000 TCGCGCTTTCTATGGCTTCCAGATTGCCATAGAGAATATCCACTCCGAAATGTATAGCCT 24571059 Query 125284 CTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAA 125343 || || | || | || || || ||| || || ||| || | || | Sbjct 24571060 CT----TGCTCGAAACCTATATCAAAGACCCGGTCGAGAAGAACCGGCTTTTCCATGCCA 24571115 Query 125344 TCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACG 125403 |||| || || || | | | || ||||| |||||| | ||||||||||| | | Sbjct 24571116 TCGAGACCGTCCCTTGTGTGGCCAAGAAGGCCGAATGGGCCCTCCGGTGGATCGACGGCA 24571175 Query 125404 ACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT 125463 | | || || ||| || | |||| || ||||| ||| ||||| || ||||||| Sbjct 24571176 CCGAATC---GTTCGCGGAGCGTTTGGTTGCTTTCGCTTGCGTGGAGGGGATTTTCTTTT 24571232 Query 125464 CGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACG 125522 |||| || || ||| || || |||||||| ||||||||||| | |||||||| || || Sbjct 24571233 CGGGGAGCTTCTGC-GCGATATTTTGGCTGAAGAAGCGCGGGTTGATGCCCGGGCTCACT 24571291 Query 125523 CACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTG 125582 | |||||||| || || ||||||||||| | ||||| ||||| | | | || || Sbjct 24571292 TTCTCGAACGAGTTGATCTCGCGAGACGAGGGTTTGCACTGCGACTTCG-CGTGCT--TG 24571348 Query 125583 TTTCGCAACTATCTGCGTCCCGAGTGCAGATCC--AGCGATGAAAAGGTCATCAACATTG 125640 || || || | ||| | ||| | ||||| ||| || | || | Sbjct 24571349 CTT------TACACGC-TGATGAG-GAAGAAGCTGAGCGAGGAACGAGTTAAGGGAATCG 24571400 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATG 125699 | ||| || || ||||| |||||| | ||| | | || || || || Sbjct 24571401 TTCGCGACGCGGTTGATATAGAGAGAGAGTTCGTGTGCGACGCGTTGCC-GTGTGCTCTG 24571459 Query 125700 ATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTG 125759 | || |||||| | | || ||| || ||||||| ||||||||||| ||| | | ||| Sbjct 24571460 GTGGGGATGAACGGTGATCTGATGAGCCAGTACATTGAGTTTGTGGCTGATAGGTTGCTG 24571519 Query 125760 TACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCAT-GACCAG 125818 | ||| | | ||||||||||| | |||| || ||||||| || || | | Sbjct 24571520 GGTGCTTTGGGGTACGGGAAGATTTACAATGTTCAGAACCCATTTGATTGGATGGAGCTG 24571579 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CA-AACGC 125876 ||||| | |||| ||||| || || |||||||||| |||| | ||||| || || || Sbjct 24571580 -ATATCGTTGCAGGGGAAGACAAATTTCTTCGAGAAGAGGGTCGGAGAGTATCAGAAAGC 24571638 Query 125877 TACGGT 125882 | |||| Sbjct 24571639 TTCGGT 24571644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741014838343640