Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 seq3 102 6e-17 seq12 95.1 9e-15 seq9 95.1 9e-15 seq38 93.3 3e-14 >seq1 Length=42390363 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || ||||||||||| ||| | ||| | || || | || Sbjct 34330478 TGCAGGGTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTCCCATCCTCAAGCTGC 34330419 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| | |||| | || ||||| || || ||||| ||||| |||||| Sbjct 34330418 TTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGAATTTTT 34330359 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||||| | || ||||| ||| | | || || || ||||| ||||| || || ||| Sbjct 34330358 GCCTTTACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTGATGGTCTTCCCGGTC 34330299 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| || |||||||| ||||| Sbjct 34330298 AGAGTCTTCACAAAAATCTGCAT 34330276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||||||||| || || || || |||||||| ||| | || | || ||||| || Sbjct 31834134 ATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCCAGAGTCCTTCCATCCTCTAACTG 31834075 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || ||||| || || || || ||||| ||| || Sbjct 31834074 CTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGTATACCCTCCTTGTCCTGAATCTT 31834015 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 |||| ||| | || ||||||||| | || || ||||| || ||||| || || || Sbjct 31834014 AGTCTTGACATTATCAATGGTATCGGAGCTCTCCACTTCTAAAGTGATGGTCTTCCCAGT 31833955 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 31833954 AAGGGTCTTCACAAAGATCTGCAT 31833931 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || |||||||| || || || |||||||| || ||| | || |||| || Sbjct 34329800 ACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGCCGTCCTCA 34329741 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||| || ||| | || | | || ||||| ||| || || || ||||| | Sbjct 34329740 AGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGA 34329681 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || || || ||| | |||| || || | ||||||||||| Sbjct 34329680 ATCTTGGCCTTCACGTTGTCAATAGTGTCGGAACTTTCGACCTCCAGAGTAATGGTTTTT 34329621 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 34329620 CCGGTGAGGGTCTTGACAAAGATTTGCAT 34329592 >seq3 Length=26737297 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| || | ||| ||||||||||| || ||||| || || ||||| || Sbjct 2106588 TGCCACCTCTCAACCTGAGAACCAAATGAAGGGTAGATTCTTTCTGGATATTGTAGTCTG 2106529 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || | ||||| ||||| | || | | || ||||| || Sbjct 2106528 CTAGTGTCCTGCCATCCTCAAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTG 2106469 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || ||||| ||||| ||| || ||| || ||| | || ||||| ||| | | || Sbjct 2106468 GTATCCCTTCCTTGTCTTGAATCTTAGCT-TTCACATTATCAATGGTGTCGGAACTCTCA 2106410 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || |||||||| || || || || || ||||| || ||||| Sbjct 2106409 ACCTCGAGAGTGATGGTTTTCCCAGTGAGTGTCTTCACAAATATCTGCAT 2106360 Score = 102 bits (112), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| || | ||| ||||||||||| || ||||| || |||||||| || Sbjct 2755866 TGCCACCTCTCAACCTAAGAACCAAATGAAGGGTAGATTCTTTCTGGATGTTGTAGTCTG 2755925 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || | ||||| ||||| | || | | || ||||| || Sbjct 2755926 CTAGTGTCCTGCCATCCTCAAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTG 2755985 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || ||||| ||||| ||| || ||| || ||| | || ||||| ||| | | || Sbjct 2755986 GTATCCCTTCCTTGTCTTGAATCTTAGCT-TTCACATTATCAATGGTGTCGGAACTCTCA 2756044 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| || || || || || ||||| || ||||| Sbjct 2756045 ACCTCGGGAGTGATGGTTTTCCCAGTGAGTGTCTTCACAAATATCTGCAT 2756094 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| |||| ||| | ||| | ||||| || || || ||||||||||| Sbjct 2107042 CCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGCA 2106983 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | || || | || || |||||| |||| | | || || || ||| Sbjct 2106982 AGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGGGA 2106923 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || || |||| ||| | || || ||||| | | || || Sbjct 2106922 ATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCACC 2106863 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || ||||| || || |||||||| ||||| Sbjct 2106862 TCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCAT 2106816 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| ||||| |||| ||| | ||| | ||||| || || || ||||||||||| Sbjct 2755412 CCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGCA 2755471 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | || || | || || |||||| |||| | | || || || ||| Sbjct 2755472 AGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGGGA 2755531 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || || |||| ||| | || || ||||| | | || || Sbjct 2755532 ATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCACC 2755591 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| |||||||| || ||||| || || |||||||| ||||| Sbjct 2755592 TCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCAT 2755638 >seq12 Length=19346091 Score = 95.1 bits (104), Expect = 9e-15 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || |||||||||||| ||| | | | || |||| ||| Sbjct 17381925 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTCCGGCCATCCTCTAGTTG 17381866 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 |||||| ||| |||| | | ||| ||||| |||||| ||||||||||| || || Sbjct 17381865 TTTGCCGGCGAATATGAGCCTTTGCTGGTCCGGTGGAATACCTTCTTTGTCCTGGATCTT 17381806 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| || | || || || || || ||||| || || || Sbjct 17381805 GGCCTTGACGTTATCAATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTCTTGCCAGT 17381746 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || |||||| Sbjct 17381745 TAGGGTTTTCACGAAGATCTGCATA 17381721 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 |||||||||||| | | || ||||| ||||| || || || || || ||||| ||| Sbjct 17399654 TGCCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGG 17399595 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | || | || || ||||| ||||| || | |||| ||| || ||||| | Sbjct 17399594 CGAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAG 17399535 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || ||||| ||||| ||| ||| || || | || ||||| ||| | || | Sbjct 17399534 GGATGCCTTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGA 17399475 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || || || || ||||||| || || ||||| |||||||| Sbjct 17399474 CCTCCAGAGTGATCGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 17399426 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || ||||||||||| ||| | | | || |||| ||| Sbjct 17399173 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTCCGGCCATCCTCTAGTTG 17399114 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || || | || | | ||| ||||| |||||| ||||||||||| || || Sbjct 17399113 TTTTCCGGCAAAGATGAGCCTTTGCTGGTCCGGTGGAATACCTTCTTTGTCCTGGATCTT 17399054 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||| | || || || || || ||||| || || || Sbjct 17399053 GGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGTCTTGCCAGT 17398994 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || |||||| Sbjct 17398993 GAGGGTTTTCACAAAGATCTGCATA 17398969 >seq9 Length=25348792 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||| ||||| || || || || |||||||||||| ||| |||| | ||||| Sbjct 3789899 AACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCTAGGGTTCTGCCATCTTC 3789840 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| |||||| || || ||||| || |||||||| ||||| Sbjct 3789839 CAGTTGCTTCCCTGCGAATATCAGCCGCTGCTGGTCCGGCGGTATTCCTTCCTTGTCTTG 3789780 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| ||| | || ||||| || || || |||| || || || || Sbjct 3789779 GATCTTCGCCTTCACATTATCGATGGTGTCCGACGACTCGACCTCTAGCGTTATTGTCTT 3789720 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15368 ||| ||||| ||||| || || || ||||| |||| Sbjct 3789719 ACCCGTCAGGGTTTTCACGAAGATCTGCATCTTTG 3789685 >seq38 Length=323574 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || || ||||| || || || || |||||||| || ||| | ||||| ||||| Sbjct 52669 TGGAGAGTGGATTCCTTCTGGATATTGTAATCTGCAAGGGTTCGACCATCTTCCAATTGC 52610 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| || ||||| ||||| ||||| ||||| || ||| Sbjct 52609 TTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAGGAATACCTTCCTTGTCCTGGATCTTG 52550 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || | || ||||||||| | || || |||| ||| ||||| || || || Sbjct 52549 GCTTTGACGTTGTCGATGGTATCGGAGCTCTCAACTTCTAGGGTTATGGTCTTTCCGGTG 52490 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 ||||| || || |||||||||||| Sbjct 52489 AGAGTCTTCACGAAAATTTGCATA 52466 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || ||||||||||| ||| | | | || |||| ||| Sbjct 52442 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCAGCGAGAGTCCGGCCATCCTCTAGTTG 52383 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | || | | ||| ||||| |||||| ||||||||||| || || Sbjct 52382 TTTTCCGGCGAAGATGAGCCTTTGCTGGTCCGGTGGAATGCCTTCTTTGTCCTGGATCTT 52323 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| ||| | || || || || || ||||| || || || Sbjct 52322 GGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCGACCTCCAAAGTGATGGTCTTTCCGGT 52263 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| || |||||| Sbjct 52262 TAGGGTTTTCACAAAGATCTGCATA 52238 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || |||||||||||| ||| | | | || |||| ||| Sbjct 33794 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTCCGGCCATCCTCTAGTTG 33735 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | || | | ||| ||||| |||||| ||||||||||| || || Sbjct 33734 TTTTCCGGCGAAGATGAGCCTTTGCTGGTCCGGTGGAATACCTTCTTTGTCCTGGATCTT 33675 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| || | || || || || || ||||| || || || Sbjct 33674 GGCCTTGACGTTATCAATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTCTTGCCAGT 33615 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || |||||| Sbjct 33614 TAGGGTTTTCACGAAGATCTGCATA 33590 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || || || || |||||||||||| ||| | | | || |||| ||| Sbjct 34176 ATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCGAGAGTCCGGCCATCCTCTAGTTG 34117 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| || ||| | || | | ||| ||||| |||||| ||||||||||| || || Sbjct 34116 TTTTCCGGCGAAGATGAGCCTTTGCTGGTCCGGTGGAATACCTTCTTTGTCCTGGATCTT 34057 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || | || ||||| || | || || || || || ||||| || || || Sbjct 34056 GGCCTTGACGTTATCAATGGTGTCAGAGCTCTCGACCTCCAAAGTGATGGTCTTGCCAGT 33997 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| || || || |||||| Sbjct 33996 TAGGGTTTTCACGAAGATCTGCATA 33972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362158061071449