Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq1 89.7 4e-13 >seq3 Length=26737297 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| ||||| |||||||| |||||||| || || | |||| | | ||||||||||| Sbjct 2107246 TGCAAAGTAGATTCCTTTTGGATATTGTAGTCAGCTAGTGTTCTACCATCCTCCAGCTGC 2107187 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | ||||||||||||||||| || | ||||| ||||| ||| || Sbjct 2107186 TTTCCAGCAAATATAAGTCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTT 2107127 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | | | ||||| | |||| || | || || || || || || Sbjct 2107126 GCCTTGACGTTATCTATGGTATCAGAACTCTCCACCTCAAGTGTGATAGTCTTTCCAGTC 2107067 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 ||||| |||||||| ||||||||| Sbjct 2107066 AAAGTCTTGACAAAGATTTGCATT 2107043 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | |||||||| || | ||||| || || ||||| ||||| |||||||| | Sbjct 2107044 TTCCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAG 2106985 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||||||| || || || | ||||| ||||||||||| || Sbjct 2106984 CAAGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGG 2106925 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || || || | | | | ||||| | |||| Sbjct 2106924 GAATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCA 2106865 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || || | || || |||||||| |||||| Sbjct 2106864 CCTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCATT 2106815 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || | |||||||| || | ||||| || || ||||| ||||| |||||||| | Sbjct 2755410 TTCCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAG 2755469 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||||||||| || || || | ||||| ||||||||||| || Sbjct 2755470 CAAGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGG 2755529 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| || || || || | | | | ||||| | |||| Sbjct 2755530 GAATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCA 2755589 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || || | || || |||||||| |||||| Sbjct 2755590 CCTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCATT 2755639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| || || |||||||| |||||||| || || | |||| | | ||||||||||| Sbjct 2755208 TGCAAAGTGGATTCCTTTTGGATATTGTAGTCAGCTAGTGTTCTACCATCCTCCAGCTGC 2755267 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | ||||| ||||||||||| || | ||||| ||||| ||| || Sbjct 2755268 TTTCCAGCAAATATAAGCCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTT 2755327 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | | | ||||| | |||| || | || || || || || || Sbjct 2755328 GCCTTGACGTTATCTATGGTATCAGAACTCTCCACCTCAAGTGTGATAGTCTTTCCAGTC 2755387 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 ||||| |||||||| ||||||||| Sbjct 2755388 AAAGTCTTGACAAAGATTTGCATT 2755411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||| ||||||||| || || || || |||| || | ||||| Sbjct 2107709 CACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAGTCGGCCAGAGTGCGCCCATCCTC 2107650 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || || || ||| ||||||| ||||||||||| || | ||||||||||| Sbjct 2107649 CAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTG 2107590 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | ||| || || | |||| || | ||||| ||||| Sbjct 2107589 GATTTTCGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTT 2107530 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||| |||||||||||||| Sbjct 2107529 GCCAGTCAGAGTTTTCACAAAAATTTGCAT 2107500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | ||| ||||||||| || || || || |||| || | ||||| Sbjct 2754745 CACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGCCCATCCTC 2754804 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||| || || || ||| ||||||| ||||||||||| || | ||||||||||| Sbjct 2754805 CAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTG 2754864 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | ||| || || | |||| || | ||||| ||||| Sbjct 2754865 GATTTTCGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTT 2754924 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | |||||| |||||||||||||| Sbjct 2754925 GCCAGTCAGAGTTTTCACAAAAATTTGCAT 2754954 >seq1 Length=42390363 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| ||||||||||| || || ||||||||||||| || | | ||||| ||||| Sbjct 34330479 GTGCAGGGTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTCCCATCCTCAAGCTG 34330420 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || |||| || |||||||| || || | ||| || ||||| |||||| Sbjct 34330419 CTTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGAATTTT 34330360 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||||| | | | | || ||| | ||| || | ||| ||||| || || || Sbjct 34330359 TGCCTTTACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTGATGGTCTTCCCGGT 34330300 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | ||| || |||||||| ||||| Sbjct 34330299 CAGAGTCTTCACAAAAATCTGCAT 34330276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414548603069866