Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq12 100 2e-16 seq38 96.9 2e-15 >seq12 Length=19346091 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | ||| | ||||||||||| ||||| || || || |||||||| || | Sbjct 17399652 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 17399593 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || ||||||||||| || ||| || | ||| |||||||||| || Sbjct 17399592 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 17399533 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 |||||||| || || |||| ||| || | | ||| |||||| | | || Sbjct 17399532 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 17399473 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| ||||| ||||| || | || || || || ||||||||| Sbjct 17399472 TCCAGAGTGATCGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCATG 17399425 >seq38 Length=323574 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | ||| | ||||||||||| ||||| || || || |||||||| || | Sbjct 34655 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 34596 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || ||||||||||| || ||| || | ||| |||||||||| || Sbjct 34595 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 34536 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 |||||||| || || |||| ||| || | | ||| |||||| | | || Sbjct 34535 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 34476 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || || ||||| || | || || || || ||||||||| Sbjct 34475 TCCAGAGTGATTGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCATG 34428 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | ||| | ||||||||||| ||||| || || || |||||||| || | Sbjct 52921 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 52862 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | | || ||||||||||| || ||| || | ||| |||||||||| || Sbjct 52861 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 52802 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 |||||||| || || |||| ||| || | | ||| |||||| | | || Sbjct 52801 ATGCCTTCCTTGTCCTGAATCTTGGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCGACC 52742 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 |||||||| || || ||||| || | || || || || ||||||||| Sbjct 52741 TCCAGAGTGATTGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCATG 52694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318758994246522