Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 seq9 84.2 2e-11 >seq7 Length=27644224 Score = 100 bits (110), Expect = 2e-16 Identities = 91/111 (82%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 |||||| | ||| |||||||||||||||| || ||||||||| || ||||| |||| Sbjct 22709641 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22709698 Query 13200 AAAATGTTAGACCCGGCAT-AAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 | ||||||||||| ||||| |||||| | ||||||| ||||||||| ||| Sbjct 22709699 AGAATGTTAGACCAGGCATCAAGCCC-CTCTTTTTAAGCCAAAATATGGCA 22709748 Score = 100 bits (110), Expect = 2e-16 Identities = 91/111 (82%), Gaps = 4/111 (4%) Strand=Plus/Minus Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 |||||| | ||| |||||||||||||||| || ||||||||| || ||||| |||| Sbjct 22995875 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22995818 Query 13200 AAAATGTTAGACCCGGCAT-AAGCCCTCGTTTTTTAATCCAAAATATAGCA 13249 | ||||||||||| ||||| |||||| | ||||||| ||||||||| ||| Sbjct 22995817 AGAATGTTAGACCAGGCATCAAGCCC-CTCTTTTTAAGCCAAAATATGGCA 22995768 >seq9 Length=25348792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 542/859 (63%), Gaps = 19/859 (2%) Strand=Plus/Minus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 |||||||| || ||| ||||| || | || || || || || || ||||| || || Sbjct 24571650 GACATAACCGAAGCTTTCTGATACTCTCCGACCCTCTTCTCGAAGAAATTTGTCTTCCCC 24571591 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC-- 12962 | ||||| || ||||| |||| || || || | ||||| | ||| | || | Sbjct 24571590 TGCAACGATATCAGCTCCATCCAATCAAATGGGTTCT--GAACATT-GTAAATCTTCCCG 24571534 Query 12963 -ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 |||| || | | ||| || ||||| |||||||| |||||||| |||| | |||| Sbjct 24571533 TACCCCAAAGCACCCAGCAACCTATCAGCCACAAACTCAATGTACTGGCTCATCAGATCA 24571474 Query 13022 CAGTTCATTCCTATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 | |||||| || | | ||| |||| || || | || | | | |||||||| Sbjct 24571473 CCGTTCATCCCCACCAGAGC-ACACGGCAACGCGTCGCACACGAACTCTCTCTCTATATC 24571415 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGAT--GC 13138 ||| || ||| ||| || || |||| ||||| || || | | || || Sbjct 24571414 AACCGCGTCGCGAACGAT-TCCCTTAACTCGTTC-CTCGCTCAGCTTCTTCCTCATCAGC 24571357 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | | | || || || || || |||||||| || || |||| || | |||||| Sbjct 24571356 GTGTAAAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTC 24571297 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 || || || || || ||||| | ||| || || || | ||||||||| || ||| | | Sbjct 24571296 GAGAAAGTGAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCGC-GCAGAAGCT 24571238 Query 13259 CCC-GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 ||| ||||| || || || || || |||| || | ||||| | | || || Sbjct 24571237 CCCCGAAAAGAAAATCCCCTCCAC----GCAAGCGAAAGCAACCAAACGCTCCGCGAACG 24571182 Query 13318 ATTTT-TACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATAT 13376 ||| | | || |||||| |||||| | || || | || || | Sbjct 24571181 ATTCGGTGCCGTCGATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGG 24571122 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 | || || || | || | || || || |||| ||||| || || | || Sbjct 24571121 TCTCGATGGCATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCA 24571062 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 | | |||||||||||| || || ||||| || || || || ||||| ||||| ||| | Sbjct 24571061 AGAGGCTATACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGC 24571002 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 |||||||| |||||||| || || || | || | || || ||| || | Sbjct 24571001 GAGCCTCTGCGACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGC 24570942 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA 13616 |||| |||||||| ||||| || | ||| ||| || | || |||| | | Sbjct 24570941 CGTCTGAGGCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTA 24570882 Query 13617 ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676 ||| ||| | ||| ||| | || | || |||||||| ||||||| || || | Sbjct 24570881 GGTTTTCCCAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGG 24570822 Query 13677 CAACAGCCTTCTTATACAT 13695 | | || ||||| ||||| Sbjct 24570821 CCTCGGCTTTCTTGTACAT 24570803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430957245308178