Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq3 96.9 3e-15 seq1 96.9 3e-15 seq38 91.5 1e-13 seq4 84.2 2e-11 >seq12 Length=19346091 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||| ||||||||||||||||| || || || | ||||||| ||| Sbjct 17382515 TGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGC-AAGGGTGCGACCATCCTCCAACTG 17382457 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||||||||||| ||| | || ||||||||| |||||| Sbjct 17382456 CTTCCCAGCAAAGATAAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGAATTTT 17382397 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | |||||||| | |||| ||| | || || || || || || Sbjct 17382396 AGCTTTCACATTGTCAATGGTATCTGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCAGT 17382337 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| ||||||||| Sbjct 17382336 CAGGGTCTTCACAAAGATCTGCATC 17382312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTC-GCTCGTCCTCCAGCT 48581 |||||| || ||||| || || |||||||| || || ||| | ||||||| || | Sbjct 17381697 ATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGC-AAGAGTCCGGCCGTCCTCAAGTT 17381639 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 | || ||| || | || || | |||||||||| || | || |||||||||| || | Sbjct 17381638 GTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATCT 17381579 Query 48642 TCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACC 48699 | ||||| | | || ||||| |||| ||| ||| | || || |||||||| Sbjct 17381578 TGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGACCTCCAAAGTAATAGTTTTACC 17381521 Query 48700 GGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| || ||||| || || |||||||| Sbjct 17381520 GGTTAGGGTTTTGACGAAGATCTGCAT 17381494 >seq3 Length=26737297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || ||||| ||||||||||| ||||| || ||||||| | || ||| | |||||||| || Sbjct 2754752 TGGAGTGTACTCTCCTTTTGGATGTTATAGTCAGCCAGAGTG-CGCCCATCCTCCAGTTG 2754810 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| | | ||||||||| || | | || ||||| ||||| Sbjct 2754811 CTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTT 2754870 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || || || | | |||| ||| | || || ||||| || || Sbjct 2754871 CGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGT 2754930 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||||||||||||||||| |||||| Sbjct 2754931 CAGAGTTTTCACAAAAATTTGCATC 2754955 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||||| || | ||| | ||| ||||| ||||||||||||||||| Sbjct 2107042 CCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGC- 2106984 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || | |||||||||||||| || || | || | | ||||||||| | Sbjct 2106983 AAGAGTC-CTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGG 2106925 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || || |||||| || || ||||| | | || ||||| | | |||| Sbjct 2106924 GAATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCA 2106865 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || |||||||| || || || || || |||||||||||||| Sbjct 2106864 CCTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCAT 2106816 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || ||||| ||||||||||| ||||| || || |||| | || ||| | |||||||| || Sbjct 2107702 TGGAGTGTACTCTCCTTTTGGATGTTATAGTCGGCCAGAGTG-CGCCCATCCTCCAGTTG 2107644 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | |||| | | ||||||||| || | | || ||||| ||||| Sbjct 2107643 CTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTT 2107584 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || || || | | |||| ||| | || || ||||| || || Sbjct 2107583 CGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGT 2107524 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||||||||||||||||| |||||| Sbjct 2107523 CAGAGTTTTCACAAAAATTTGCATC 2107499 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | |||||||| || | ||| | ||| ||||| ||||||||||||||||| Sbjct 2755412 CCACCCCTCAACCTTAGAACAAGATGCAAAGTGGATTCCTTCTGAATGTTGTAATCAGC- 2755470 Query 48560 AATTGTCGCT--CGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || | |||||||||||||| || || | || | | ||||||||| | Sbjct 2755471 AAGAGTC-CTACCATCCTCCAGCTGCTTTCCAGCGAATATAAGCCTCTGCTGATCAGGGG 2755529 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | || || |||||| || || ||||| | | || ||||| | | |||| Sbjct 2755530 GAATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTGTCAATTGTATCAGAACTCTCCA 2755589 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || |||||||| || || || || || |||||||||||||| Sbjct 2755590 CCTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACAAAAATCTGCAT 2755638 >seq1 Length=42390363 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| |||| | | | ||||| |||||||| || || | Sbjct 34330467 CTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCGAA 34330408 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | | |||||| || || | | |||||||||| |||||| ||| | | Sbjct 34330407 AATCAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGAATTTTTGCCTTTACATT 34330348 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| |||| | ||| ||| | || ||||| || ||||| ||||| ||||| Sbjct 34330347 GTCAATGGTGTCGGAACTCTCAACCTCCAAGGTGATGGTCTTCCCGGTCAGAGTCTTCAC 34330288 Query 48715 AAAAATCTGCATC 48727 ||||||||||||| Sbjct 34330287 AAAAATCTGCATC 34330275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| || | ||| ||||||| |||||||| ||| || | Sbjct 31833438 CTCCTTCTGGATGTTGTAATCTGCGAGGGTTCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 31833379 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || || | ||||||||| || | | ||||||||| || || ||||| | Sbjct 31833378 GATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 31833319 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| |||| | ||| ||||| |||||||| || ||||| || ||||| Sbjct 31833318 GTCG--ATGGTGTCGGAACTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTTG 31833261 Query 48713 ACAAAAATCTGCATC 48727 || || || |||||| Sbjct 31833260 ACGAAGATTTGCATC 31833246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCT 48581 |||||| ||| |||||| ||||| |||||||||||| | ||| | | ||||| | || Sbjct 31834134 ATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCC-AGAGTCCTTCCATCCTCTAACT 31834076 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || | | || || | |||||| || || | || ||||||||| ||| | Sbjct 31834075 GCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGGTATACCCTCCTTGTCCTGAATCT 31834016 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||||| |||| || | || ||||| || || | Sbjct 31834015 TAGTCTTGACATTATCAATGGTATCGGAGCTCTCCACTTCTAAAGTGATGGTCTTCCCAG 31833956 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||| |||||||| Sbjct 31833955 TAAGGGTCTTCACAAAGATCTGCAT 31833931 >seq38 Length=323574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| ||||||||||||||||| || || || | ||||||| |||||| || | Sbjct 34848 CTCCTTCTGAATGTTGTAATCAGC-AAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAA 34790 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||||||| || | || ||||||||| |||||| || | | Sbjct 34789 AGATGAGACGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACAT 34730 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||| | |||| ||| | || || || || || || || || |||| Sbjct 34729 TGTCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCAGTCAGGGTCTTCA 34670 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 34669 CAAAGATCTGCATC 34656 >seq4 Length=30445767 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||| |||||| || |||||| ||||||||||| | ||||| || |||||||| Sbjct 2276528 ACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTTGGCCAAAGTCCGGCCGTCCTCC 2276469 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||| || ||| || | || | ||||| ||||| | | | ||||||||| Sbjct 2276468 AGCTGTTTTCCGGCGAAGATGAGTCGCTGTTGATCAGGAGAAATTCCTTCCTTGTCTTGT 2276409 Query 48638 ATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| |||| | | | ||||| || | ||||| ||| | |||||||| || Sbjct 2276408 ATCTTC-GCTTTCACGTTGTCGATGGTGTCCGACGACTCAACCTCTATGGTTATGGTCTT 2276350 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || |||||||| ||||| ||||| Sbjct 2276349 GCCCGTAAGGGTTTTCACGAAAATTTGCAT 2276320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| ||||||||||| | ||||| || ||||||||||||| Sbjct 3595638 ATGAAGAGTCGACTCCTTCTGAATGTTGTAGTTGGCCAAAGTCCGGCCGTCCTCCAGCTG 3595579 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 || ||| || | || | ||||| ||||| || | | ||||||||| || || Sbjct 3595578 TTTTCCGGCGAAGATGAGTCGCTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGTATCTT 3595519 Query 48643 CTGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | |||| | | | ||||| || | ||||| ||| | |||||||| || || | Sbjct 3595518 C-GCTTTCACGTTGTCGATGGTGTCCGACGACTCAACCTCTATGGTTATGGTCTTGCCCG 3595460 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| ||||| ||||| Sbjct 3595459 TAAGGGTTTTCACGAAAATTTGCAT 3595435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226613278789