Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8 114 7e-21 seq12 111 8e-20 seq1751 109 3e-19 seq1 105 3e-18 seq2 102 4e-17 seq11 87.8 9e-13 >seq8 Length=23350829 Score = 114 bits (126), Expect = 7e-21 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||| |||| ||| ||||||| |||||| ||| |||||||| ||||||||| Sbjct 6346462 AAAAATAAAAT-AATAGAAATACAAATTGTCCCATGCAAGTCTCGAACCTGCGACCTTCG 6346520 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTA 11522 |||||||||||||||||||| ||||||||||||| Sbjct 6346521 CGTTATTAGCACGACGCTCTAACCAACTGAGCTA 6346554 >seq12 Length=19346091 Score = 111 bits (122), Expect = 8e-20 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||||| || ||||||| || || |||||||||| | | |||||||| |||||||| Sbjct 3394400 AATATAAAAAATATAAAAATTCGAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 3394459 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||||| ||||||||||||||| |||| Sbjct 3394460 GCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAATAGGCC 3394501 Score = 104 bits (114), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 |||||| |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 8549286 AAATCAT-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCC 8549344 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 8549345 CTAACCAACTGAGCTAATAGGCC 8549367 >seq1751 Length=7661 Score = 109 bits (120), Expect = 3e-19 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||| |||| ||||| | ||| ||||||||| | | |||||||| ||||||||| Sbjct 6957 AATTATAAAATTCTTAAAATA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 6900 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||| ||||||||||||||| |||| Sbjct 6899 CGTTATTAGCCCGACGCTCTAACCAACTGAGCTAATAGGCC 6859 >seq1 Length=42390363 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 5538820 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 5538879 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 5538880 CTGAGCTAATAGGCC 5538894 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||| ||| ||| || Sbjct 19855310 AAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGTTCTAAC 19855251 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 19855250 CAACTGAGCTAAGAGGCC 19855233 >seq2 Length=27986743 Score = 102 bits (112), Expect = 4e-17 Identities = 85/104 (82%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||| | ||| || | |||| |||| |||||||||| | | |||||||| |||||| Sbjct 11099259 AAATTAAAAATAAAAATAAAAACAAACTTTTGGCCCATGCAGGTCTCGAACCTGCGACCT 11099318 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||| || ||||||||||||||| |||| Sbjct 11099319 TCGCGTTATTAGGACGACGCACTAACCAACTGAGCTAATAGGCC 11099362 >seq11 Length=20703932 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||| ||||||||||||||| ||||| Sbjct 14608689 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCTCCTTTAGCACGACGCTCTAACCAA 14608630 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 14608629 CTGAGCTAATAGGCC 14608615 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261475937820964