Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 150 3e-32 seq97 145 1e-30 seq3 145 1e-30 seq2 129 9e-26 >seq1 Length=42390363 Score = 150 bits (166), Expect = 3e-32 Identities = 179/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || |||||||| || ||||| |||||||| || | ||||||||| | ||||| || ||| Sbjct 16497 GACAACATCCAGGGGATCACTAAGCCAGCCATTAGACGTCTGGCTAGGCGTGGCGGCGTC 16438 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || ||| | |||| || |||| ||||| || | |||||||||||| || Sbjct 16437 AAGCGTATCAGTGGCCTCATCTACGAGGAGACTCGTGGCGTCCTCAAGATCTTCCTCGAG 16378 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| || || || || |||||||||||| || ||||| |||||| || Sbjct 16377 AACGTGATCCGCGACGCCGTCACTTACACCGAGCACGCTCGCCGGAAGACCGTCACCGCC 16318 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| | || | || ||||||| | || ||||| ||| | ||| Sbjct 16317 ATGGACGTTGTCTATGCTCTCAAGAGGCAGGGCCGTACTCTCTACGGTTTCGGAGGCTAA 16258 Query 16700 TCT 16702 || Sbjct 16257 GCT 16255 >seq97 Length=225540 Score = 145 bits (160), Expect = 1e-30 Identities = 194/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || || ||||| || | | || || || |||||||| |||||||| || ||||| || || Sbjct 93519 GCGAAACGTCACCGTAAGGTC-CTCCGGGATAACATTCAAGGAATTACGAAGCCTGCCAT 93577 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| |||||| | ||||| || |||||| | ||| || |||| || |||| Sbjct 93578 TCGTCGTCTTGCTCGTAGAGGTGGTGTGAAGCGTATAAGTGGTCTGATCTACGAGGAGAC 93637 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| | ||||||||||| ||| ||| || | ||| ||| || || || || Sbjct 93638 TCGTGGGGTTCTCAAGATCTTCCTTGAGAACGTGATTCGTGACGCTGTCACGTACACTGA 93697 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||| || ||| |||||||| | || |||||| | || | || || Sbjct 93698 GCACGCTAGGAGGAAGACGGTGACCGCCATGGATGTGGTTTATGCACTCAAGAGGCAGGG 93757 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | ||||| ||||| |||| Sbjct 93758 TAGGACTCTGTATGGATTTGGGGGTTA 93784 >seq3 Length=26737297 Score = 145 bits (160), Expect = 1e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | |||||| |||||||| || |||||||| |||||||| || Sbjct 9513250 GCGAAGCGTCATCGCAAAGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCAGCCATT 9513309 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| ||||||| | |||||||| |||||| || || ||| | || || || | Sbjct 9513310 CGTCGTTTGGCTCGCAGAGGTGGAGTGAAGCGTATCAGCGGCTTGATTTACGAGGAAACC 9513369 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||||||| ||| |||||| || || | || |||||| Sbjct 9513370 CGTGGGGTGCTCAAGATCTTCCTCGAGAATGTTATCAGAGACGCCGTGACTTACACCGAG 9513429 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAA 16662 || || || ||||| || || ||||||| | |||||||| ||||| Sbjct 9513430 CATGCCCGCCGGAAGACCGTGACGGCCATGGACGTGGTCTATGCTTTGAA 9513479 Score = 98.7 bits (108), Expect = 2e-16 Identities = 170/247 (69%), Gaps = 0/247 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| |||||||||||||| || ||||| ||||| || ||||| | |||| | | || Sbjct 8935127 TCTGCGAGATAACATCCAGGGGATCACGAAGCCTGCGATCCGAAGATTGGCCAGGAGAGG 8935068 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 |||||| ||| | || || | ||||||| || | | | ||| | |||||||| Sbjct 8935067 TGGAGTGAAGAGGATCAGCGGTCTCATCTATGAGGAAACCAGAGGTGTGCTCAAGATCTT 8935008 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| || || | ||||||| | ||| |||||||| || | | ||||| || Sbjct 8935007 CTTGGAGAATGTGATTCGTGATGCTGTGACCTACACCGAGCATGCCAGGAGGAAGACAGT 8934948 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||| | |||||||| | || | || || | | | ||||| ||||| Sbjct 8934947 GACCGCCATGGATGTTGTCTATGCTCTCAAGAGGCAGGGTAGGACTTTGTATGGGTTTGG 8934888 Query 16693 AAGTTAA 16699 ||||| Sbjct 8934887 GGGTTAA 8934881 >seq2 Length=27986743 Score = 129 bits (142), Expect = 9e-26 Identities = 191/271 (70%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | ||| | || |||||||| || ||||||||||| || || Sbjct 9974805 GCCAAGCGTCATAGGAAGGTTCTCAGGGACAACATCCAGGGTATCACCAAGCCTGCGATT 9974746 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||| ||| | || || || |||||| || || | |||| || |||| Sbjct 9974745 CGCCGTCTGGCACGTAGAGGCGGTGTGAAGCGTATCAGCGGTCTCATCTACGAGGAGACC 9974686 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | || | ||||||||||| | | || |||| ||| || | || || ||| Sbjct 9974685 AGAGGAGTCCTCAAGATCTTCCTGGAAAATGTGATCCGTGACGCCGTGACTTACACTGAG 9974626 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | ||||| |||||| |||||||| | || ||||| |||||| | ||||| Sbjct 9974625 CACGCTAGGAGGAAGACGGTCACCGCCATGGATGTTGTTTATGCCTTGAAAAGGCAAGGA 9974566 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 | | ||||||||||||| ||| || || Sbjct 9974565 AGGACTCTTTATGGTTTTGGTGGTTGATTTT 9974535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070821383777