Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 172 7e-38 seq2164 107 2e-18 seq5 107 2e-18 seq8 91.5 2e-13 seq7 89.7 6e-13 >seq9 Length=25348792 Score = 172 bits (190), Expect = 7e-38 Identities = 392/585 (67%), Gaps = 10/585 (2%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 ||| || ||||| |||||||||| ||||||||||| || | ||||| || || || Sbjct 24571348 CAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGT 24571289 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| |||||||| | || ||||| || ||||||||||| | ||| || ||||| Sbjct 24571288 GAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCGCGCAGAAGCTCCCCGAAAA 24571229 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGT 33475 ||| || || || || ||| || |||| | | ||| | ||| ||| || || Sbjct 24571228 GAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTC-CGCGAACGATTCGGTGCCGT 24571170 Query 33476 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 33535 | |||||| | ||||| ||||||||||| |||||||| | || || |||| Sbjct 24571169 C---GATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGG 24571113 Query 33536 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 33595 ||| || || ||| || || ||||| | ||| || |||| ||| || |||| Sbjct 24571112 CATGGAAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTAT 24571053 Query 33596 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 33655 ||||||| || || || || || ||||| ||||| || || |||||| | |||||| | Sbjct 24571052 ACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTG 24570993 Query 33656 TAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTCACTG 33714 | ||| || || | || | | | || || | ||| || || || ||||| | Sbjct 24570992 CGACCTGAACCTC-CTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAG 24570934 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || ||||| || || | ||||| || || | || ||||| || ||||| || | | Sbjct 24570933 GCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCC 24570874 Query 33775 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 33834 || | | | ||| | ||| | || || || || | ||||| || || ||||| || Sbjct 24570873 CAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCT 24570814 Query 33835 TTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATA 33879 || || ||||| | |||||| | |||||||| || || ||| Sbjct 24570813 TTCTTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACATA 24570769 >seq2164 Length=5404 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| |||||||| | ||| |||||||| || || ||||| | ||| | | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || |||| ||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | || ||| || | |||||| | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 63791 AGTTTTAAAACCAAAATA 63808 || ||||||||||| || Sbjct 4646 GGTCTTAAAACCAAAGTA 4663 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 4121 TCCCCCTTGATCAACATAACGAGCAGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 4180 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| || || ||||||| ||||| | ||| Sbjct 4181 ATTCGATGTCCCATTTGTTCCACGAATATAACTGCCTGTGGCACGGATATTTTGAGCTGA 4240 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 || ||| ||||| ||||| || ||| | || ||| || || |||||||| || Sbjct 4241 TACACCAATTCCTCCTGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTGTCATATAT 4300 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 4301 GCCTTCAATGCTATCATCTTTCATG 4325 >seq5 Length=31365312 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| |||||||| | ||| |||||||| || || ||||| | ||| | | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || |||| ||| | || || ||||| | ||| ||||| || || | || | |||||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | || ||| || | |||||| | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 63791 AGTTTTAAAACCAAAATA 63808 || ||||||||||| || Sbjct 24811734 GGTCTTAAAACCAAAGTA 24811717 >seq8 Length=23350829 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 63371 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63430 ||| || ||||| | || | ||| || | ||| |||| || | |||||||| ||| || Sbjct 17136278 TCCCCCTTGATCAACATAACGAGCTGTATCATTGAAAACCCTTAGCATTGGAACAATGCC 17136219 Query 63431 GTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63490 || ||| | ||||| || || ||||| || || |||||||||||||| |||||| Sbjct 17136218 ATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTGGCACGAATATTATGAATTGA 17136159 Query 63491 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63550 | ||| || || || || || ||| | || ||| || || || ||||| || Sbjct 17136158 GACACCAATCCCTCCAGCTGACTTGCTGATAACAGCACATTCCTTCAAGGTATCATATAT 17136099 Query 63551 ACCCTCTATGCTATCATCGATCATG 63575 || || ||||||||||| ||||| Sbjct 17136098 GCCTTCAATGCTATCATCTTTCATG 17136074 >seq7 Length=27644224 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 |||||| | ||| || ||||| |||||||| ||||| |||||| ||| || || || | Sbjct 22709641 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22709698 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400 | || || || || ||||| | ||| | |||||||||||||||||||| Sbjct 22709699 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGG 22709746 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/108 (79%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 |||||| | ||| || ||||| |||||||| ||||| |||||| ||| || || || | Sbjct 22995875 TAAACA--AGACAAGCAAAATCACAGTGCAGGCCCTCATCTCTAGAAATAAGCTCATTTG 22995818 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGG 33400 | || || || || ||||| | ||| | |||||||||||||||||||| Sbjct 22995817 AGAATGTTAGACCAGGCATCAAGCCCCTCTTTTTAAGCCAAAATATGG 22995770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909908823240