Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq38 89.7 5e-13 seq12 89.7 5e-13 seq3 89.7 5e-13 seq4 86.0 6e-12 seq1 86.0 6e-12 seq256 84.2 2e-11 seq9 82.4 7e-11 >seq38 Length=323574 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| ||||| |||| ||||| | ||||| | || | || | Sbjct 52239 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAGACCATCACTTTGGAGGTCGAGAGCTCC 52298 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || || || Sbjct 52299 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCGGACCAG 52358 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || ||| |||||||| || |||| | | || || || ||| Sbjct 52359 CAAAGGCTCATCTTCGCCGGAAAACAACTAGAGGATGGCCGGACTCTCGCTGATTACAAC 52418 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||||||||| Sbjct 52419 ATCCAGAAGGAATCGACCCTCCATCTGGTCCT 52450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | || || ||||| |||| || ||| | || || | || | || Sbjct 33359 CAGAATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACTATTACTCTGGAGGTCGAGAG 33418 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 33419 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGA 33478 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || || ||||| | || ||| |||||||| || || | | | || ||| || Sbjct 33479 TCAGCAGAGGCTCATCTTCGCCGGAAAACAACTTGAGGACGGCCGGACTCTCGCCGATTA 33538 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || ||||||||||||| Sbjct 33539 CAACATCCAGAAGGAATCGACCCTCCATCTGGTCCT 33574 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || || || Sbjct 33651 GACACCATTGATAACGTCAAGGCCAAGATCCAGGACAAAGAAGGTATTCCACCGGACCAG 33710 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || ||| |||||||| || |||| | | || ||| || ||| Sbjct 33711 CAAAGGCTCATCTTCGCCGGAAAACAACTAGAGGATGGCCGGACTCTCGCCGATTACAAC 33770 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||||||||| Sbjct 33771 ATCCAGAAGGAATCGACCCTCCATCTGGTCCT 33802 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || || || Sbjct 34033 GACACCATTGATAACGTCAAGGCCAAGATCCAGGACAAAGAAGGTATTCCACCGGACCAG 34092 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || ||| |||||||| || |||| | | || ||| || ||| Sbjct 34093 CAAAGGCTCATCTTCGCCGGAAAACAACTAGAGGATGGCCGGACTCTCGCCGATTACAAC 34152 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||||||||| Sbjct 34153 ATCCAGAAGGAATCGACCCTCCATCTGGTCCT 34184 >seq12 Length=19346091 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||||||||| || || || || || Sbjct 17381782 GACACCATTGATAACGTCAAGGCCAAGATCCAGGACAAAGAAGGTATTCCACCGGACCAG 17381841 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||| | || |||||||||||| || |||| | | || ||| || ||| Sbjct 17381842 CAAAGGCTCATATTCGCCGGCAAACAACTAGAGGATGGCCGGACTCTCGCCGATTACAAC 17381901 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || ||||||||||||| Sbjct 17381902 ATCCAGAAGGAATCGACCCTCCATCTGGTCCT 17381933 >seq3 Length=26737297 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| | ||||| ||| | ||||| |||| | || | Sbjct 2106360 ATGCAGATATTTGTGAAGACACTCACTGGGAAAACCATCACTCTCGAGGTTGAGAGTTCC 2106419 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| |||||| ||||| ||||||||||| || || || Sbjct 2106420 GACACCATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCACCTGACCAG 2106479 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | | || ||||| || || |||| || || ||| ||||| || Sbjct 2106480 CAGAGGCTCATCTTTGCTGGGAAACAGCTTGAGGATGGCAG-GACACTAGCAGACTACAA 2106538 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||||||||| | ||| |||| || || | ||||| || Sbjct 2106539 TATCCAGAAAGAATCTACCCTTCATTTGGTTCTCAGGTTGAGAGGTGG 2106586 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| | ||||| ||| | ||||| ||| | || | Sbjct 2756094 ATGCAGATATTTGTGAAGACACTCACTGGGAAAACCATCACTCCCGAGGTTGAGAGTTCC 2756035 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || ||| |||||| ||||| ||||||||||| || || || Sbjct 2756034 GACACCATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCACCTGACCAG 2755975 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | | || ||||| || || |||| || | | ||| ||||| || Sbjct 2755974 CAGAGGCTCATCTTTGCTGGGAAACAGCTTGAGGATGGCAGGACACT-AGCAGACTACAA 2755916 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || ||||||||||| | ||| |||| || || | ||||| || Sbjct 2755915 CATCCAGAAAGAATCTACCCTTCATTTGGTTCTTAGGTTGAGAGGTGG 2755868 >seq4 Length=30445767 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | || ||||| || | || || Sbjct 3595435 ATGCAAATTTTCGTGAAAACCCTTACGGGCAAGACCATAACCATAGAGGTTGAGTCGTCG 3595494 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || ||| ||||| ||||| ||||| || ||||| |||||| Sbjct 3595495 GACACCATCGACAACGTGAAAGCGAAGATACAAGACAAGGAAGGAATTCCTCCTGATCAA 3595554 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||||||| | || ||| ||||| || || || | | | | | |||| ||| Sbjct 3595555 CAGCGACTCATCTTCGCCGGAAAACAGCTGGAGGACGGCCGGACTTTGGCCAACTACAAC 3595614 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || ||| | |||||||| || Sbjct 3595615 ATTCAGAAGGAGTCGACTCTTCATCTGGTTCT 3595646 >seq1 Length=42390363 Score = 86.0 bits (94), Expect = 6e-12 Identities = 156/227 (69%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 26755 TTTAGTCAAACAAA-ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATC 26813 ||| |||| || | |||||| | || || ||||| ||||| || || | ||||| || Sbjct 13907848 TTTTGTCATCCATAGATGCAAATCTTCGTCAAAACCTTAACCGGCAAGACCATCACTCTC 13907789 Query 26814 GAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGG 26873 || | || ||||||||||| | |||||| ||||| |||||||| || Sbjct 13907788 GAGGTCGAGAGCTCTGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAAGAGGGA 13907729 Query 26874 ATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC 26933 || || || |||||||||||| | || | || || || ||||| || || | | | | | Sbjct 13907728 ATTCCCCCAGATCAACAAAGATTGATCTTCGCAGGAAAGCAACTAGAGGACGGTCGTACC 13907669 Query 26934 GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 | |||||| || || || || || || || |||||||||| || Sbjct 13907668 CTAGCCGACTACAATATCCAGAAGGAGTCAACCCTCCATCTGGTTCT 13907622 >seq256 Length=127809 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || || ||||| || ||||| |||||||||||| | |||| | || || ||| | ||| Sbjct 84920 GATAAGGAAGGCATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAA 84861 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||| | || |||||||| ||||| || || ||| | || |||||| || Sbjct 84860 GATGGACGAACTCTTGCAGATTATAACATCCAAAAGGAGTCGACTCTTCACCTGGTCTTG 84801 Query 26982 AGACTTAGAGGAGGAA 26997 || ||||| ||||||| Sbjct 84800 AGGCTTAGGGGAGGAA 84785 >seq9 Length=25348792 Score = 82.4 bits (90), Expect = 7e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| ||||| || || || Sbjct 3789750 GACACCATCGATAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATACCGCCGGACCAG 3789809 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || || || ||||| ||||||| |||| | | ||| || ||| Sbjct 3789810 CAGCGGCTGATATTCGCAGGGAAGCAACTGGAAGATGGCAGAACCCTAGCCGATTACAAC 3789869 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 || || || || || || |||||||||| ||| |||| || |||||| Sbjct 3789870 ATCCAGAAGGAGTCGACCCTCCATCTGGTTCTGCGACTCAGGGGAGGA 3789917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633746072080