Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq38 96.9 3e-15 seq1 95.1 1e-14 seq3 93.3 4e-14 seq12 91.5 1e-13 seq9 84.2 2e-11 >seq38 Length=323574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| |||| || ||| | ||||| | || |||||| Sbjct 33359 CAGAATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACTATTACTCTGGAGGTCGAGAG 33418 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 33419 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGA 33478 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||| || || | || ||| || ||||| || || | | | | || |||||| Sbjct 33479 TCAGCAGAGGCTCATCTTCGCCGGAAAACAACTTGAGGACGGCCGGACTCTCGCCGATTA 33538 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || ||||| || Sbjct 33539 CAACATCCAGAAGGAATCGAC 33559 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| |||| || ||| | ||||| | || |||||| Sbjct 52007 CAGAATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACAATTACTTTGGAGGTCGAGAG 52066 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | || || ||||| ||||| ||||| || ||||| || Sbjct 52067 CTCCGACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGA 52126 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||| |||| | || ||| || |||||||| || | | | | | |||||| Sbjct 52127 TCAGCAGAGGTTGATCTTCGCCGGGAAACAACTCGAGGACGGCCGGACTCTTGCCGATTA 52186 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 || || || || ||||| || ||||| Sbjct 52187 CAATATCCAGAAGGAATCAACCCTTCAT 52214 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| ||||| | || || | || |||||| | | Sbjct 52239 ATGCAGATCTTTGTGAAAACCCTAACCGGAAAGACCATCACTTTGGAGGTCGAGAGCTCC 52298 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| ||||| |||||||||||||| || || || || Sbjct 52299 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCACCGGACCAG 52358 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | || ||| || ||||| || |||| | | | || ||||| ||| Sbjct 52359 CAAAGGCTCATCTTCGCCGGAAAACAACTAGAGGATGGCCGGACTCTCGCTGATTACAAC 52418 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 52419 ATCCAGAAGGAATCGAC 52435 >seq1 Length=42390363 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || || | || || |||| |||||| | Sbjct 31833247 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAGACCATAACTCTCGAGGTCGAGAGTTCC 31833306 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 31833307 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCAGATCAG 31833366 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| ||||| || | | ||| | || ||||| ||| Sbjct 31833367 CAGAGGTTGATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGAACCCTCGCAGATTACAAC 31833426 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 31833427 ATCCAGAAGGAGTCAAC 31833443 Score = 86.0 bits (94), Expect = 5e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| ||||| || || | || || |||| |||||| | Sbjct 13907833 ATGCAAATCTTCGTCAAAACCTTAACCGGCAAGACCATCACTCTCGAGGTCGAGAGCTCT 13907774 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| |||||||| || || || || |||||| Sbjct 13907773 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAAGAGGGAATTCCCCCAGATCAA 13907714 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 || ||| |||| | || || |||||||| || || Sbjct 13907713 CAAAGATTGATCTTCGCAGGAAAGCAACTAGAGGA 13907679 >seq3 Length=26737297 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | ||||| ||| | || || |||| || ||| | Sbjct 2106360 ATGCAGATATTTGTGAAGACACTCACTGGGAAAACCATCACTCTCGAGGTTGAGAGTTCC 2106419 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||| ||||| ||||| || || || Sbjct 2106420 GACACCATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCACCTGACCAG 2106479 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || || || || || |||| ||| | | ||| || || || Sbjct 2106480 CAGAGGCTCATCTTTGCTGGGAAACAGCTTGAGGATGGCAGGACACT-AGCAGACTACAA 2106538 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || ||||||||||| ||||||| || | || |||||||| || Sbjct 2106539 TATCCAGAAAGAATCTACCCTTCATTTGGTTCTCAGGTTGAGAGGTGG 2106586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | ||||| ||| | || || ||| || ||| | Sbjct 2756094 ATGCAGATATTTGTGAAGACACTCACTGGGAAAACCATCACTCCCGAGGTTGAGAGTTCC 2756035 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || ||| |||||| ||||| ||||| ||||| || || || Sbjct 2756034 GACACCATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCACCTGACCAG 2755975 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | || || || || || |||| ||| | | ||| || || || Sbjct 2755974 CAGAGGCTCATCTTTGCTGGGAAACAGCTTGAGGATGGCAGGACACT-AGCAGACTACAA 2755916 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||||||||||| ||||||| || | || |||||||| || Sbjct 2755915 CATCCAGAAAGAATCTACCCTTCATTTGGTTCTTAGGTTGAGAGGTGG 2755868 >seq12 Length=19346091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| |||| || ||| | ||||| | || |||||| Sbjct 17381490 CAGAATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACTATTACTTTGGAGGTCGAGAG 17381549 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 17381550 CTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGA 17381609 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||| |||| | || ||| || ||||| || || | | | | | |||||| Sbjct 17381610 TCAGCAGAGGTTGATCTTCGCCGGAAAACAACTTGAGGACGGCCGGACTCTTGCCGATTA 17381669 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 || || || || ||||| || ||||| Sbjct 17381670 CAATATCCAGAAGGAATCAACCCTTCAT 17381697 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || ||||| | || ||| | ||||| ||| | | Sbjct 17399198 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATAACCCTAGAAGTTGAGAGCTCC 17399257 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| ||||| || ||||| || || Sbjct 17399258 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGACCAG 17399317 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || || |||||| | ||||||| ||| | | ||||| || Sbjct 17399318 CAGCGTCTGATCTTCGCGGGAAAGCAATTGGAAGATGGTCGAACCCTTGCAGATTACAAT 17399377 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 17399378 ATCCAGAAGGAATCCAC 17399394 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || ||||| |||| || || | ||||| | || |||||| Sbjct 17398738 CAGAATGCAGATCTTCGTCAAAACCCTAACCGGTAAGACAATTACTTTGGAGGTCGAGAG 17398797 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | |||||||||||| | || || ||||| ||||| ||||| || ||||| || Sbjct 17398798 CTCCGACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCGGA 17398857 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || ||| | ||||| | || || |||||| | ||||||| ||| | | ||||| Sbjct 17398858 CCAGCAGCGTCTGATCTTCGCGGGAAAGCAATTGGAAGATGGTCGAACCCTTGCAGATTA 17398917 Query 24167 TAACATTCAAAAAGAATCTACAATTCAT 24194 || || || || ||||| || ||||| Sbjct 17398918 CAATATCCAGAAGGAATCAACCCTTCAT 17398945 >seq9 Length=25348792 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| | || || || | || || | || |||||| | Sbjct 3789687 AAGATGCAGATCTTCGTGAAAACCCTGACGGGTAAGACAATAACGCTAGAGGTCGAGTCG 3789746 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | || || ||||| ||||| ||||| ||||| || || Sbjct 3789747 TCGGACACCATCGATAATGTGAAGGCGAAGATCCAAGACAAGGAAGGAATACCGCCGGAC 3789806 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || || |||||||| ||||||| ||||| | | |||||| Sbjct 3789807 CAGCAGCGGCTGATATTCGCAGGGAAGCAACTGGAAGATGGCAGAACCCTAGCCGATTAC 3789866 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || || || || || | ||| | || | || | || |||||| Sbjct 3789867 AACATCCAGAAGGAGTCGACCCTCCATCTGGTTCTGCGACTCAGGGGAGGA 3789917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429910906382295