Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq38 113 4e-20 seq12 111 1e-19 seq1 100 2e-16 seq3 98.7 8e-16 >seq38 Length=323574 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| |||| || |||| |||||| || || ||||| || || ||||||||||| Sbjct 34656 CCCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGC 34597 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||||||||| ||||| ||| | || || ||||| |||||| ||| Sbjct 34596 GAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 34537 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 34536 GATGCCTTCCTTGTCCTGAATCTTGGCT--TTGACGTTGTCAATGGTGTCGGAGCTCTCG 34479 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| |||| ||| |||||||| || ||||| Sbjct 34478 ACCTCCAGAGTGATTGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 34429 Score = 113 bits (124), Expect = 4e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| |||| || |||| |||||| || || ||||| || || ||||||||||| Sbjct 52922 CCCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGC 52863 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | ||||||||||| ||||| ||| | || || ||||| |||||| ||| Sbjct 52862 GAGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 52803 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 52802 GATGCCTTCCTTGTCCTGAATCTTGGCT--TTGACGTTGTCAATGGTGTCGGAGCTCTCG 52745 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| |||| ||| |||||||| || ||||| Sbjct 52744 ACCTCCAGAGTGATTGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 52695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || |||||||| || | || || ||||| ||||| || || ||||| ||||| Sbjct 34427 CCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCA 34368 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| ||||||||||| || || | || || ||||| |||||| ||| Sbjct 34367 AGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 34308 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 34307 ATACCTTCCTTGTCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGAGCTCTCAA 34250 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||| ||||| |||||||| || || || || || || ||||| Sbjct 34249 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTCACGAAGATTTGCAT 34201 >seq12 Length=19346091 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| |||| || |||| |||||| || || ||||| || || ||||||||||| Sbjct 17399652 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 17399593 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||||||| ||||| ||| | || || ||||| |||||| ||| Sbjct 17399592 AGAGTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 17399533 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 17399532 ATGCCTTCCTTGTCCTGAATCTTGGCT--TTGACGTTGTCAATGGTGTCGGAGCTCTCGA 17399475 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || ||||| |||| ||| |||||||| || ||||| Sbjct 17399474 CCTCCAGAGTGATCGTCTTTCCTGTCAACGTCTTGACAAAGATTTGCAT 17399426 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || |||||||| || | || || ||||| ||||| || || ||||| ||||| Sbjct 17382176 CCTCCACGAAGCCTCAGAACAAGGTGGAGAGTGGATTCCTTCTGGATATTGTAATCGGCA 17382117 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| |||| ||||||||||| || || | || || ||||| |||||| ||| Sbjct 17382116 AGGGTCCGACCGTCTTCCAATTGTTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGA 17382057 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | |||||| | ||| Sbjct 17382056 ATACCTTCCTTGTCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGAGCTCTCAA 17381999 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||| ||||| |||||||| || || ||||| || || ||||| Sbjct 17381998 CTTCTAGGGTTATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 17381950 >seq1 Length=42390363 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || |||||||| || |||| || | | ||||| | || Sbjct 34330478 TGCAGGGTAGACTCCTTCTGGATGTTGTAATCCGCCAGAGTCCTCCCATCCTCAAGCTGC 34330419 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| |||| ||| ||||| ||| | ||| || ||||| ||||| Sbjct 34330418 TTGCCAGCGAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGAATTTTT 34330359 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| ||| |||| ||||||||| || |||||| Sbjct 34330358 GCCTTTACATTGTCAATGGTGTCGGAACTCTCAACCTCCAAGGTGATGGTCTTCCCGGTC 34330299 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || |||||||||||||| Sbjct 34330298 AGAGTCTTCACAAAAATCTGCAT 34330276 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || ||||||||||| || | || || ||||| Sbjct 34329803 AGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGAGTCCTGCCGTCC 34329744 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | ||||| || || | || |||| ||| |||||| || | ||||| ||||| Sbjct 34329743 TCAAGCTGTTTTCCGGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCT 34329684 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | | ||||||| || |||| || |||||| Sbjct 34329683 TGAATCTTGGCCTTCACGTTGTCAATAGTGTCGGAACTTTCGACCTCCAGAGTAATGGTT 34329624 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||| || || |||||||| || |||||| Sbjct 34329623 TTTCCGGTGAGGGTCTTGACAAAGATTTGCATT 34329591 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || ||||||||||| || |||||||| || |||| ||| | | ||| Sbjct 13906938 AGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCTTCCATCC 13906997 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || || || ||| | || | || ||||||||| || | ||||| || || Sbjct 13906998 TCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCTTATCC 13907057 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| || || | | | |||||| | |||| ||||| ||||||| Sbjct 13907058 TGAATCTTAGCT--TTGACATTATCAATAGTGTCAGAGCTCTCCACTTCCAGAGTGATGG 13907115 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || || ||||| |||||||| Sbjct 13907116 TCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 13907149 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || ||||| |||| ||||| || |||||||| || ||||||||||| || Sbjct 34330275 CCCACCACGCAGTCTCAGAACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGC 34330216 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||| | || || || || | ||||||| ||| || || || Sbjct 34330215 AAGGGTCCTCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGGGG 34330156 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGC--TCC 16885 | ||||| ||||| ||| | | ||| || | | | | |||| ||| || || Sbjct 34330155 AATTCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGT--CCGAGCTTTCA 34330098 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||||||||| || |||| || || || |||||||||||| Sbjct 34330097 ACCTCCAAAGTGATGGTTTTCCCTGTCAAAGTCTTAACGAAAATCTGCATT 34330047 >seq3 Length=26737297 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 16744 CTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATA 16803 ||||||||| ||||| |||||||||| || | ||||||| ||| ||||| ||| | Sbjct 2107691 CTCCTTTTGGATGTTATAGTCGGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAA 2107632 Query 16804 AATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTG 16863 |||||||| ||| || || ||| | ||||||||||| |||| | |||||| | Sbjct 2107631 AATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATT 2107572 Query 16864 GCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGAC 16923 | | | ||||| |||| || | || || ||||| || ||||| ||||| || Sbjct 2107571 GTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCAC 2107512 Query 16924 AAAAATCTGCAT 16935 |||||| ||||| Sbjct 2107511 AAAAATTTGCAT 2107500 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 16744 CTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATA 16803 ||||||||| ||||| ||||| |||| || | ||||||| ||| ||||| ||| | Sbjct 2754763 CTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCGGCAAA 2754822 Query 16804 AATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTG 16863 |||||||| ||| || || ||| | ||||||||||| |||| | |||||| | Sbjct 2754823 AATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTCACATT 2754882 Query 16864 GCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGAC 16923 | | | ||||| |||| || | || || ||||| || ||||| ||||| || Sbjct 2754883 GTCGATTGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAGTTTTCAC 2754942 Query 16924 AAAAATCTGCAT 16935 |||||| ||||| Sbjct 2754943 AAAAATTTGCAT 2754954 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| ||||||||||| || ||||| ||||| || | ||| || | ||| Sbjct 2755655 AGGACAAGATGCAAGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTGCCATCC 2755714 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || || | ||||| | ||||||||| || | ||||| ||||| Sbjct 2755715 TCCAACTGTTTTCCAGCGAATATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTGTCC 2755774 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | ||| || | | | | ||| ||| | |||| || | ||| || || Sbjct 2755775 TGTATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCACCTCAAGGGTAATAGTC 2755834 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || ||||| ||||| || ||||| Sbjct 2755835 TTGCCAGTAAGAGTTTTCACAAATATTTGCAT 2755866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405064356659110