Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9 187 3e-42 seq12 87.8 2e-12 seq4 87.8 2e-12 seq156 86.0 7e-12 seq11 86.0 7e-12 seq6 84.2 2e-11 seq5 84.2 2e-11 seq1 84.2 2e-11 >seq9 Length=25348792 Score = 187 bits (206), Expect = 3e-42 Identities = 585/889 (66%), Gaps = 28/889 (3%) Strand=Plus/Minus Query 92802 TTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||| || || || || || | || || |||||||||||||| || | ||| |||||| Sbjct 24571636 TTTCTGATACTCTCCGACCCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGATATCAG 24571577 Query 92862 ATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTC--ACCGATCAACTCGTAC 92917 | || | | | ||| |||| | || ||| ||| | ||| ||| | | Sbjct 24571576 CTCCATCCAATCAAATGGGTTCTGAACATTGTAAATCTTCCCGTACCC--CAAAGCACCC 24571519 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 | || |||||||| ||||| || |||||||| ||||| ||||| ||||| || | Sbjct 24571518 AGCAACCTATCAGCCACAAACTCAATGTACTGGCTCATCAGATCACCGTTCATCCCCACC 24571459 Query 92978 AGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 ||| | ||| || | |||||| || ||| ||| |||| || |||| || || | Sbjct 24571458 AGA-GCACACGGCAACGCGTCGCACACGAACTCTCTCTCTATATCAACCGCGTCGCGAAC 24571400 Query 93037 GATTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAAT--TGTACATTAAGC 93092 |||| | | |||| | | | | | || || | ||| | |||| | |||| Sbjct 24571399 GATTCCCTTAACTCGT-TCCTCGCTCAGCTTCTT---CCTCATCAGCGTGTAAAGCAAGC 24571344 Query 93093 ACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAAC 93152 |||| |||||| || ||||| |||||||| || |||||||| || ||| || | | Sbjct 24571343 ACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGCC 24571284 Query 93153 CTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaT 93211 | || | || || || ||||| ||||||||||| | ||| || || || ||||| || Sbjct 24571283 CGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCG-CGCAGAAGCTCCCCGAAAAGAAA 24571225 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 || || |||||| || || || || | ||| || || || | ||| | | | | Sbjct 24571224 ATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCGAACGATTCGG---TGCCGTCG 24571168 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTA 93331 ||||| | ||||| ||||| || || | |||||| | || ||||| || | Sbjct 24571167 ATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCATGG 24571108 Query 93332 AATA---GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || | ||| ||| |||| ||| ||| || || || |||| || || |||| Sbjct 24571107 AAAAGCCGGT--TCT-TCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCTATAC 24571051 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 ||||| || |||| |||||| || ||||| ||||| || |||||| | ||| || | | Sbjct 24571050 ATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGCG 24570991 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | ||| || || | || ||| | ||||||| || || || || || || || Sbjct 24570990 ACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCA 24570931 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAA 93568 ||||| ||||| | | |||| || || || ||||| || | || || ||||| Sbjct 24570930 GCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCCAG 24570871 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | ||| | || || ||||| || ||| | ||||| || || || || ||||| Sbjct 24570870 TGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTC 24570811 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||||||| ||||| || | | ||||| || ||||| || ||| ||| Sbjct 24570810 TTGTACATTTCCCAGATTTGCGGGTATTGGATCGGAAACAT-ACAGAAC 24570763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 7968662 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTAGAGGGC 7968603 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 7968602 GTGGGTTCAAATCCCACTTCTGACA 7968578 >seq12 Length=19346091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 4716142 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCG 4716085 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || |||||| ||| ||||| Sbjct 4716084 TGGGTTCAAATCCCACAGCTGTCAAAT 4716058 >seq4 Length=30445767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 12766558 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGGAAGGGCG 12766501 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || |||||| ||| ||||| Sbjct 12766500 TGGGTTCAAATCCCACAGCTGTCAAAT 12766474 >seq156 Length=175587 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 168273 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 168332 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 168333 TGGGTTCAAATCCCACTTCTGACA 168356 >seq11 Length=20703932 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 4230981 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 4231038 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 4231039 GCGTGGGTTCAAATCCCACTTCTGACA 4231065 >seq6 Length=25259912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 5105493 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGATAGAGGGC 5105552 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 5105553 GTGGGTTCAAATCCCACTTCTGACA 5105577 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 || ||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 5658943 GTTAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 5658884 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 5658883 TGGGTTCAAATCCCACTTCTGACA 5658860 >seq5 Length=31365312 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 10256847 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 10256790 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 10256789 GGGTTCAAATCCCACAGCTGTCAATTTTTT 10256760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 10267017 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 10266960 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 10266959 GGGTTCAAATCCCACAGCTGTCAATTTTTT 10266930 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| || | | | || Sbjct 24963973 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGTTAGAGGGC 24964032 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 24964033 GTGGGTTCAAATCCCACTTCTGACA 24964057 >seq1 Length=42390363 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/83 (83%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 6253662 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 6253605 Query 126328 TTCGAACCCCACACCTGACAAAT 126350 ||| || |||||| ||| ||||| Sbjct 6253604 TTCAAATCCCACAGCTGTCAAAT 6253582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 6/91 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 18761092 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTATGAGG 18761035 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 18761034 GCGTGGGTTCAAATCCCACTTCTGACAATTT 18761004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556827464920360