Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 131 3e-25 seq1585 107 4e-18 seq9 95.1 2e-14 seq1318 93.3 9e-14 seq173 93.3 9e-14 seq7 93.3 9e-14 seq6 93.3 9e-14 seq3 93.3 9e-14 seq816 91.5 3e-13 seq534 91.5 3e-13 seq11 91.5 3e-13 seq10 87.8 4e-12 >seq5 Length=31365312 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| || ||||| || | ||||| || || | ||||| ||||| Sbjct 1856541 TGGTTGATGGTCTGAAGCCTGGTCAAAGGAAGATTCTATTCTGTTCTTTCAAAAGGAACT 1856482 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | || ||||| ||||||||||||||||||||||||||||| || ||| | |||| Sbjct 1856481 TTTTTAAAGAAGCAAAGGTCGCTCAGTTTTCTGGTTATGTATCTGAGCATTCAGCATACC 1856422 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || || ||||| ||||| || ||||| | || ||||| ||||| |||||||| | Sbjct 1856421 ACCATGGAGAGCAAAGTCTTGCCAGTACCATTATTGGAATGGCGCAGGATTATGTGGGTA 1856362 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| ||||| ||| | || | || || || ||||| ||| ||||| Sbjct 1856361 GTAATAACATTAACCTTCTTCAACCAAATGGCCAGTTCGGTACTCGT 1856315 >seq1585 Length=9028 Score = 107 bits (118), Expect = 4e-18 Identities = 174/248 (70%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 270550 TGTTGGACTCCACGATTGCCCCGATGAGAGACTGAGGGATGCCCGCAAAGTTTGCGTGCA 270609 |||| ||||| ||||| ||| ||| || | ||| || | || | |||| ||| ||| Sbjct 2382 TGTTCGACTCGACGATGGCCTTGATCAGTGTCTGCGGAACGCTCTGGTAGTTGGCGAGCA 2323 Query 270610 GTTGCTTGGTATCCTTGGGGAAACAGTAACCACCATACCCAAAGCTTGGGTTACAGTACC 270669 ||||||||||||||||||| | || || || || || |||||| ||||| || | Sbjct 2322 GTTGCTTGGTATCCTTGGGCAGGCAATATCCGCCGTAACCAAAGGAAGGGTTGTTATAGC 2263 Query 270670 CGCTGCCAATACGAGGTTCCAGCATAACCCCCTCCACAATCTTGGAGGC-ATCAAGGTTG 270728 ||| || ||||| || ||||| || ||||| | ||| || ||| ||| || | Sbjct 2262 CGCCACCTATACGCGGATCCAGTGAAATGCCCTCGATAAT-GTGCCGGCTATCGAGCCCG 2204 Query 270729 TGTTTGAGAGCAAATGTGTCCAGTTCATTGAAATAACTAACGCGCATTGCCAGGTATGTG 270788 || | | ||| | |||||||| |||||||| || |||||||| || || || || Sbjct 2203 TGCGTTACCGCATAAGTGTCCAGCTCATTGAAGTAGGATACGCGCATCGCAAGATACGTA 2144 Query 270789 TTGGCAAA 270796 ||||| || Sbjct 2143 TTGGCGAA 2136 >seq9 Length=25348792 Score = 95.1 bits (104), Expect = 2e-14 Identities = 283/434 (65%), Gaps = 6/434 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | ||| |||| || || || |||||||| | || || ||||| Sbjct 24571611 TCGAAGAAATTTGTCTTCCCCTGCAACGATATCAGCTCCATCCAATCAAATGGGTTCTGA 24571552 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||||||| ||| | || | || | | | | || ||||||||||| | Sbjct 24571551 ACATTGTAAATCTTCCCGTACCCCAAAGCACCCAGCAACCTATCAGCCACAAACTCAATG 24571492 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| ||| |||||| || | || | ||| || | || || || | | Sbjct 24571491 TACTGGCTCATCAGATCACCGTTCATCCCCACCAGAGCACACGGCAACGCGTCGCACACG 24571432 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || | || | |||| || || || ||| |||| || || || |||| Sbjct 24571431 AACTCTCTCTCTATATCAACCGCGTCGCGAACGATTCCCTTAACTCGTTCCTCGCTCAGC 24571372 Query 251803 TTGTTCTCCAGCTTTGAGTACAG-GAGCTCGCCAAACTGTTG--GTGCAGACCCTCGTCG 251859 || ||| || | | ||| || ||| ||| || || | ||||| ||||||||| Sbjct 24571371 TTCTTCCTCATCAGCGTGTAAAGCAAGCACGCGAA---GTCGCAGTGCAAACCCTCGTCT 24571315 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||| |||||||| || | | || || ||||||| ||| || ||| | ||||| Sbjct 24571314 CGCGAGATCAACTCGTTCGAGAAAGTGAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAA 24571255 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 || || ||||| ||| || || || | | ||||| || || | | ||||| | Sbjct 24571254 AATATCGCGCAGAAGCTCCCCGAAAAGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAA 24571195 Query 251980 CGCTCAGCAAACGA 251993 ||||| || ||||| Sbjct 24571194 CGCTCCGCGAACGA 24571181 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 25001253 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 25001194 Query 142564 CCCAC 142568 ||||| Sbjct 25001193 CCCAC 25001189 >seq1318 Length=12495 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 1373 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1314 Query 142563 CCCCAC 142568 |||||| Sbjct 1313 CCCCAC 1308 >seq173 Length=164396 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 92200 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 92259 Query 142563 CCCCAC 142568 |||||| Sbjct 92260 CCCCAC 92265 >seq7 Length=27644224 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 16404622 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16404563 Query 142563 CCCCAC 142568 |||||| Sbjct 16404562 CCCCAC 16404557 >seq6 Length=25259912 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 9421648 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 9421589 Query 142563 CCCCAC 142568 |||||| Sbjct 9421588 CCCCAC 9421583 >seq3 Length=26737297 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 7942415 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7942474 Query 142563 CCCCAC 142568 |||||| Sbjct 7942475 CCCCAC 7942480 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 8572779 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8572720 Query 142563 CCCCAC 142568 |||||| Sbjct 8572719 CCCCAC 8572714 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 14202699 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 14202758 Query 142564 CCCAC 142568 ||||| Sbjct 14202759 CCCAC 14202763 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 15082660 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 15082601 Query 142564 CCCAC 142568 ||||| Sbjct 15082600 CCCAC 15082596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 17543789 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 17543730 Query 142564 CCCAC 142568 ||||| Sbjct 17543729 CCCAC 17543725 >seq816 Length=30616 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 7631 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7690 Query 142564 CCCAC 142568 ||||| Sbjct 7691 CCCAC 7695 >seq534 Length=63194 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 41447 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 41388 Query 142564 CCCAC 142568 ||||| Sbjct 41387 CCCAC 41383 >seq11 Length=20703932 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 13969643 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13969584 Query 142564 CCCAC 142568 ||||| Sbjct 13969583 CCCAC 13969579 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 16615487 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16615428 Query 142564 CCCAC 142568 ||||| Sbjct 16615427 CCCAC 16615423 >seq10 Length=20983256 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3388637 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3388696 Query 142563 CCCCAC 142568 |||||| Sbjct 3388697 CCCCAC 3388702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027773732897549