Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 192 1e-43 >seq9 Length=25348792 Score = 192 bits (212), Expect = 1e-43 Identities = 388/573 (68%), Gaps = 7/573 (1%) Strand=Plus/Plus Query 42284 GATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 |||| | ||| | | |||||| ||||||||||| || || |||| ||||||||| Sbjct 24570778 GATCCAATACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGC 24570837 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGTCTGAGAACGAA 42401 ||||||| | ||||| | |||| || | |||||| || | |||| Sbjct 24570838 CGAGGAGGTCGACCTCTCTCAGGATGTTCGTCA--CTGGGAAAACCTAACCCCCGACGAG 24570895 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 ||| ||| | | | || || ||||| || ||||| |||||||| || ||| Sbjct 24570896 AAGCACTTCATTTCGCATGTGCTCGCTTTCTTTGCTGCCTCAGACGGCATCGTTTTGGAG 24570955 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 || || ||| ||||||||||| ||||| ||| | ||||| ||| ||||| ||| Sbjct 24570956 AATCTCGCCGGGAGGTTCATGAAGGAGGTTCAGGTCGCAGAGGCTCGCGCTTTCTATGGC 24571015 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTAC 42581 |||||||| ||||||||||| | ||||| || |||| | ||||| | || || Sbjct 24571016 TTCCAGATTGCCATAGAGAATATCCACTCCGAAATGTATAGCCTCTTGCTCGAAACCTAT 24571075 Query 42582 ATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATC 42641 ||| || || |||||| ||| |||| ||| | ||||| ||||| | || || | Sbjct 24571076 ATCAAAGACCCGGTCGAGAAGAACCGGCTTTTCCATGCCATCGAGACCGTCCCTTGTGTG 24571135 Query 42642 AAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAG 42701 |||||||| || ||||| ||| |||||||| | |||| | |||||| ||| Sbjct 24571136 GCCAAGAAGGCCGAATGGGCCCTCCGGTGGATCGACGGCACCGA---ATCGTTCGCGGAG 24571192 Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 | |||| || || | ||| ||||| || ||||| ||||| |||| | | || Sbjct 24571193 CGTTTGGTTGCTTTCGCTTGCGTGGAGGGGATTTTCTTTTCGGGGAGCTTCTGCGCGATA 24571252 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 || ||||| ||| || | || ||||||||| ||||| ||||||||||| | ||| Sbjct 24571253 TTTTGGCTGAAGAAGCGCGGGTTGATGCCCGGGCTCACTTTCTCGAACGAGTTGATCTCG 24571312 Query 42822 AGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 | |||||||| |||| | ||||| || ||| Sbjct 24571313 CGAGACGAGGGTTTGCACTGCGACTTCGCGTGC 24571345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944282669494640