Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 seq38 91.5 1e-13 seq12 91.5 1e-13 seq3 86.0 5e-12 >seq9 Length=25348792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || || ||||| |||||||| || || ||||||||| ||||||||||| || Sbjct 3789916 CCTCCCCTGAGTCGCAGAACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGCT 3789857 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||| || || |||||||| |||||||| ||| ||| Sbjct 3789856 AGGGTTCTGCCATCTTCCAGTTGCTTCCCTGCGAATATCAGCCGCTGCTGGTCCGGCGGT 3789797 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | | || ||||| || || ||| | | | | || | || ||| Sbjct 3789796 ATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTATCGATGGTGTCCGACGACTCGACC 3789737 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||||||| || || || || |||||||| ||||| ||||| ||| Sbjct 3789736 TCTAGCGTTATTGTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTTT 3789686 >seq38 Length=323574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| ||||||| ||| || || |||||||| || ||||| || || Sbjct 34655 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 34596 Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| || || |||||||||||||||||||| ||||| |||||||| ||| || Sbjct 34595 AGA-GTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 34537 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || || |||||| ||| || Sbjct 34536 GATGCCTTCCTTGTCCTGAATCTT 34513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| ||||||| ||| || || |||||||| || ||||| || || Sbjct 52921 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 52862 Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| || || |||||||||||||||||||| ||||| |||||||| ||| || Sbjct 52861 AGA-GTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 52803 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || || |||||| ||| || Sbjct 52802 GATGCCTTCCTTGTCCTGAATCTT 52779 >seq12 Length=19346091 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||||||| ||||||| ||| || || |||||||| || ||||| || || Sbjct 17399652 CCACCTCTCAGCCGAAGCACCAAATGCAGGGTCGATTCCTTCTGGATATTGTAGTCGGCG 17399593 Query 33961 AATTGTCGCTCG-TCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| || || |||||||||||||||||||| ||||| |||||||| ||| || Sbjct 17399592 AGA-GTCCTTCCATCCTCCAATTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGG 17399534 Query 34020 CACGCTCTCTTTGTCCATAATTTT 34043 | || || |||||| ||| || Sbjct 17399533 GATGCCTTCCTTGTCCTGAATCTT 17399510 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || || ||||| || ||||||||||||||||||||| || || || || Sbjct 17382530 AGACGAAGGACAAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAATCAGC-AAGGGTGCG 17382472 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || ||||| ||||| || ||||| || || |||||||||||| ||| | | ||| Sbjct 17382471 ACCATCCTCCAACTGCTTCCCAGCAAAGATAAGACGCTGCTGATCCGGCGGAATACCCTC 17382412 Query 34029 TTTGTCCATAATTTT 34043 |||||| |||||| Sbjct 17382411 CTTGTCCTGAATTTT 17382397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || ||||||||||| || |||||||| || ||||||||||| Sbjct 17398969 ACCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCTGC 17398910 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | ||| | || ||||||||||| || || || ||||| |||||||| ||| || Sbjct 17398909 AAGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGATCAGACGCTGCTGGTCCGGAGG 17398850 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGC 34078 | | || |||||| || || ||||| | | | || | || | ||| Sbjct 17398849 AATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTC-GGAGCTCTCGA 17398791 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | || ||||| || |||||||| ||||| || ||||| |||||| Sbjct 17398790 CCTCCAAAGTAATTGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCATT 17398741 >seq3 Length=26737297 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || ||||| || || || || |||||||| || ||||| || || || Sbjct 2107727 ACCTCCACGAAGGCGGAGCACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAGTCGGC 2107668 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || | || ||| | || |||| ||||||||||||||| || || | ||||||||| | Sbjct 2107667 CAGAGTG-CGCCCATCCTCCAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAG 2107609 Query 34019 GCACGCTCTCTTTGTC 34034 | | | ||||||||| Sbjct 2107608 GGATCCCCTCTTTGTC 2107593 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || || ||||| || || || || |||||||| || ||||| || || || Sbjct 2754727 ACCTCCACGAAGGCGGAGCACAAGGTGGAGTGTACTCTCCTTTTGGATGTTATAGTCAGC 2754786 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || | || ||| | || |||| ||||||||||||||| || || | ||||||||| | Sbjct 2754787 CAGAGTG-CGCCCATCCTCCAGTTGCTTGCCGGCAAAAATAAGCCTCTGCTGATCAGGAG 2754845 Query 34019 GCACGCTCTCTTTGTC 34034 | | | ||||||||| Sbjct 2754846 GGATCCCCTCTTTGTC 2754861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397039225080778