Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 122 1e-22 >seq9 Length=25348792 Score = 122 bits (134), Expect = 1e-22 Identities = 534/824 (65%), Gaps = 26/824 (3%) Strand=Plus/Minus Query 127223 AGCTTGCCG-TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCAT-CGAGGCTGA 127280 ||||| | | || || ||||||| |||||||||||| ||||||||||| | | | | | | Sbjct 24571639 AGCTTTCTGATACTCTCCGACCCTCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGAT-A 24571581 Query 127281 TATTCTCCATAAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGT 127339 | |||||| ||||||||||||||| || |||| | | ||||||| Sbjct 24571580 TCAGCTCCATCCAATCAAATGGGTTCTGAACATTGTAAATCTTCCCGTACCCCAAAGCAC 24571521 Query 127340 TTGAGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCG 127399 || | | ||| | || |||||||||||| |||| ||| |||||| || Sbjct 24571520 CC-AGCAACCTATCAGCCACAAACTCAATGTACTGGCTCATCAGATCACCGTTCATCCCC 24571462 Query 127400 ATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGT 127459 | || ||| || | |||||| | | |||| | |||| || || || || || || Sbjct 24571461 ACCAGAGCACACGGCAACGCGTCGCACACGAACTCTCTCTCTATATCAACCGCGTCGCGA 24571402 Query 127460 ACGATGGCGTGAA-TAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTC-C 127516 ||||| | | || | || ||| | | ||| | | || | | | || | || | Sbjct 24571401 ACGATTCCCTTAACTCGT-TCCTCGCTCAGCT-TCTTCCTCATCAGCGTGTAAAGCAAGC 24571344 Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 || || || || ||| | ||||||||| || ||||| | || |||||||| || Sbjct 24571343 AC-GCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGC 24571285 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 || ||||| | || |||||||||| ||| || ||||| || || || || ||||| Sbjct 24571284 CCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCGCGCAGAAGCTCCCCGAAAAGAAA 24571225 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA 127696 ||||||||||| || ||||| |||| | |||||| || || || || | || Sbjct 24571224 ATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCGAACGATTCGG---TGCCGTCG 24571168 Query 127697 AACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCA 127756 | |||| | ||||| | ||||| || | | ||| |||||||||| ||| || | Sbjct 24571167 ATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCGATGGCATGG 24571108 Query 127757 AAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATC---TATGAGTTTTGAATAT 127813 || || ||||| || || |||||||| || | || | ||| | ||| Sbjct 24571107 AAAAGCCGGTTCTTCTCGACCGGGTCTTTGATATAGGTTTCGAGCAAGAGGCT---ATAC 24571051 Query 127814 GTTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGC 127871 ||||| ||||| ||| ||||||| ||| | | ||||||| ||| || || Sbjct 24571050 ATTTCGGAGTGGA--TATTCTCTATGGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTG 24570993 Query 127872 TTATCTGTACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACC 127931 | ||| ||||| | || | || |||||| ||||| || || || || Sbjct 24570992 CGACCTGAACCTCCTTCATGAACCTCCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGG 24570933 Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCC 127991 ||||||| || || || | || | ||||| | || || | | | ||| | | || Sbjct 24570932 CAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGGTTAGGTTTTCCC 24570873 Query 127992 AGTCGTCG-AGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| | || | ||||| ||||| || |||||||| || ||||| Sbjct 24570872 AGT-GACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCA 24570830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613470473925240