Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9 206 4e-48 >seq9 Length=25348792 Score = 206 bits (228), Expect = 4e-48 Identities = 566/859 (66%), Gaps = 21/859 (2%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 |||||||||| || || ||||| |||| || ||||| ||||| | | ||||||| Sbjct 24571616 TCTTCTCGAAGAAATTTGTCTTCCCCTGCAACGATATCAGCTCCATCCAATCAAATGGGT 24571557 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 ||| || | || |||| | || | ||| |||||||||| || |||||||| | Sbjct 24571556 TCTGAACATTGTAAATCTTCCCGTACCCCAAAGCACCCAGCAACCTATCAGCCACAAACT 24571497 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCG 159827 | ||||| | |||| | |||| ||| ||||||| ||| | || | ||| || Sbjct 24571496 CAATGTACTGGCTCATCAGATCACCGTTCATCCCCACCAGAGCACACGGCAACGCGTCGC 24571437 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 ||| ||||| |||| || || ||||| ||| || || | || ||||| | | Sbjct 24571436 ACACGAACTCTCTCTCTATATCAACCGCGTCGCGAACGATTCCCTTAACTCGTTCCTCGC 24571377 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 | |||| | || | | | | || | |||||| ||||||||||||| |||| Sbjct 24571376 TCAGCTTCTTCCTCATCAG---CGTGTAAAGCAAGCACGCGAAGTCGCAGTGCAAACCCT 24571320 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 |||| || ||||| |||||||| || | |||| || ||||| | ||| ||| || | Sbjct 24571319 CGTCTCGCGAGATCAACTCGTTCGAGAAAGTGAGCCCGGGCATCAACCCGCGCTTCTTCA 24571260 Query 160008 GCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTCCACGGCCGCAAACGCC 160066 ||||||| || | |||| |||| || | |||| || |||||||||||| || || || Sbjct 24571259 GCCAAAATATCG-CGCAGAAGCTCCCCGAAAAGAAAATCCCCTCCACGCAAGCGAAAGCA 24571201 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 || | | ||| | || || | |||| | | | |||||| ||||||||| ||| Sbjct 24571200 ACCAAACGCTCCGCGAACGA---TTCGGTGCCGTCGATCCACCGGAGGGCCCATTCGGCC 24571144 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACA 160186 ||||| || | || || | | ||||| ||| | || | | || || ||| | Sbjct 24571143 TTCTTGGCCACACAAGGGACGGTCTCGATGGCATGGAAAAGCCGGTTCTTCTCGACCGGG 24571084 Query 160187 TCCTTGATCAGAGT----AGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGAT 160242 || ||||| || ||||| ||| |||||||| | ||| | ||| || || Sbjct 24571083 TCTTTGATATAGGTTTCGAGCAAGAGGCT----ATACATTTCGGAGTGGATATTCTCTAT 24571028 Query 160243 GGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCT 160302 ||| ||||| ||| |||||| ||||| ||| ||||||| ||||||| Sbjct 24571027 GGCAATCTGGAAGCCATAGAAAGCGCGAGCCTCTGCGACCTGAACCTCCTTCATGAACCT 24570968 Query 160303 TTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGA 160362 | ||||| | ||| | ||||| | ||| ||||||||||| | ||| || || Sbjct 24570967 CCCGGCGAGATTCTCCAAAACGATGCCGTCTGAGGCAGCAAAGAAAGCGAGCACATGCGA 24570908 Query 160363 GATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAA 160422 ||||| || ||||||| | | || ||||||||||| || || || | | Sbjct 24570907 AATGAAGTGCTTCTCGTCGGGGGTTAG---GTTTTCCCAGTGACGAACATCCTGAGAGAG 24570851 Query 160423 ATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGA-TGG 160481 || ||||| || ||| |||| || |||| || | |||||||| |||||| | | Sbjct 24570850 GTCGACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATTTCCCAGATTTG 24570791 Query 160482 CGTGCTCTCTGATCGGAAA 160500 || | | | ||||||||| Sbjct 24570790 CG-GGTATTGGATCGGAAA 24570773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795107600021840