Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq38 120 2e-22 seq12 111 1e-19 seq3 96.9 2e-15 >seq38 Length=323574 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| ||| | || ||| || || ||||| |||||||| Sbjct 52237 CCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCA 52178 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || || | |||||||||| | || || || | ||||||||||| || Sbjct 52177 AGAGTCCGGCCGTCCTCGAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGATCCGGAGGA 52118 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || |||| ||| | | | ||||| | ||| || || Sbjct 52117 ATACCTTCCTTGTCCTGGATCTTGGCCTTAA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 52059 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||||||||||||||| |||| ||||| |||||||||||||| Sbjct 52058 CTCCAAAGTAATTGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 52011 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| ||| | || ||| || || || || |||||||| Sbjct 33589 CCACCACGCAGACGAAGGACCAGATGGAGGGTCGATTCCTTCTGGATGTTGTAATCGGCG 33530 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || || | |||||| ||| | || || | | ||||||||||| || Sbjct 33529 AGAGTCCGGCCGTCCTCAAGTTGTTTTCCGGCGAAGATGAGCCTCTGCTGATCCGGAGGA 33470 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || || | ||| | | | ||||| | ||| || || Sbjct 33469 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 33411 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||| |||||||| |||| ||||| |||||||||||||| Sbjct 33410 CTCCAGAGTAATAGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 33363 >seq12 Length=19346091 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| ||| | || ||| || || ||||| ||||| || Sbjct 17398968 CCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCTGCA 17398909 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | || |||| |||||||| |||||||| || | | | ||||||||| |||| || Sbjct 17398908 AGGGTTCGACCATCTTCCAATTGCTTTCCCGCGAAGA-TCAGACGCTGCTGGTCCGGAGG 17398850 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || |||| ||| | | | ||||| | ||| || | Sbjct 17398849 AATACCTTCCTTGTCCTGGATCTTGGCCTTAA-CGTTGTCGATGGTGTCGGAGCTCTCGA 17398791 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||||||||| ||||| |||| ||||| |||||||||||||| Sbjct 17398790 CCTCCAAAGTAATTGTCTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 17398742 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||| ||| || |||| ||| | || ||| || || ||||| |||||||| Sbjct 17381720 CCACCACGCAGACGAAGGACCAGATGAAGGGTTGATTCCTTCTGGATATTGTAATCGGCA 17381661 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | || | || || | |||||| ||| | || || || | ||||||||||| || Sbjct 17381660 AGAGTCCGGCCGTCCTCAAGTTGTTTTCCGGCGAAGATCAACCTCTGCTGATCCGGAGGA 17381601 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | ||||| ||||| || || || | ||| | | | ||||| | ||| || || Sbjct 17381600 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGAC 17381542 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| |||||||| |||| ||||| |||||||||||||| Sbjct 17381541 CTCCAAAGTAATAGTTTTACCGGTTAGGGTTTTGACGAAGATCTGCAT 17381494 >seq3 Length=26737297 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCG 39582 || || || ||||| || ||||| ||||||| | ||| |||| |||| ||| || ||| Sbjct 2107696 GTACTCTCCTTTTGGATGTTATAGTCGGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCG 2107637 Query 39583 CCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA 39642 ||||||| | | ||||||||| | || | || |||||||| ||||| || Sbjct 2107636 GCAAAAATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTC 2107577 Query 39643 A--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAG 39700 | | |||| | |||||| | || ||||| || | |||||||||||| || || | || Sbjct 2107576 ACATTGTCGAT--TGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAG 2107519 Query 39701 TTTTTACGAAGATCTGCAT 39719 |||| || || || ||||| Sbjct 2107518 TTTTCACAAAAATTTGCAT 2107500 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCG 39582 || || || ||||| || ||||| || |||| | ||| |||| |||| ||| || ||| Sbjct 2754758 GTACTCTCCTTTTGGATGTTATAGTCAGCCAGAGTGCGCCCATCCTCCAGTTGCTTGCCG 2754817 Query 39583 CCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA 39642 ||||||| | | ||||||||| | || | || |||||||| ||||| || Sbjct 2754818 GCAAAAATAAGCCTCTGCTGATCAGGAGGGATCCCCTCTTTGTCTTGGATTTTCGCCTTC 2754877 Query 39643 A--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAG 39700 | | |||| | |||||| | || ||||| || | |||||||||||| || || | || Sbjct 2754878 ACATTGTCGAT--TGTGTCCGAACTCTCCACCTCAAGAGTAATTGTTTTGCCAGTCAGAG 2754935 Query 39701 TTTTTACGAAGATCTGCAT 39719 |||| || || || ||||| Sbjct 2754936 TTTTCACAAAAATTTGCAT 2754954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347349325447637