Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4 131 2e-25 seq6 100 4e-16 seq5 86.0 8e-12 seq2164 82.4 9e-11 >seq4 Length=30445767 Score = 131 bits (144), Expect = 2e-25 Identities = 276/404 (68%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 || || || || | ||||| ||||| || | | |||||||| ||||| ||||||||| Sbjct 26227833 TTAGTAGCTGCAACGACAATGATACCAGTGTTGCCTTCAAAACCGTCCATTTCTGTCAAA 26227892 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGT 16052 || ||||||| || ||||| | ||||||||| || |||| |||| || | | Sbjct 26227893 AGTTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CCACCAATTCCAGTACCTCTT 26227949 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 ||| |||| || |||||||| ||||||| || || ||||| ||| ||| || | | | Sbjct 26227950 TGCCTTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTC-CTTG-G 26228007 Query 16113 ACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 16170 |||| ||| ||||| || || || || || |||||||||||||| || ||||| | Sbjct 26228008 CCTTCTTAAAAAGATCACGCACTCGAGAAGCACCAACACCAACAAACATTTCTACAAACT 26228067 Query 16171 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 16229 | | ||| || | | || || ||| || ||| || ||||| || ||| || Sbjct 26228068 CAGAACCTGAA-ATGGAAAAAAATGGAACACCAGCTTCTCCAGCAATTGCCTTGGCTAGC 26228126 Query 16230 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 |||||||| || || ||||| ||| | || || | ||| || || || ||| Sbjct 26228127 AGAGTCTTTCCAGTTCCTGGGGGACCAACAAGAAGAACTCCTTTAGGGATGCGAGCCCCA 26228186 Query 16290 CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 || | | |||||||||| ||| | ||| ||||| | ||| Sbjct 26228187 ACCGCAGTGAACCTCTCAGGTTTCTTCAAAAACTCCACCACCTC 26228230 >seq6 Length=25259912 Score = 100 bits (110), Expect = 4e-16 Identities = 251/373 (67%), Gaps = 10/373 (3%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTGG 16033 || ||||||||||| || || ||||||||||||||||| |||| |||||| ||| Sbjct 581912 AAGCCATCCATCTCAGTTAAGAGCTGGTTAATAGTTTGCTCCCTCTCATCATTTCCACCT 581971 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | || ||| || | | ||| | || || |||||||||||||| || || || ||||| Sbjct 581972 CCTA-GACCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCTATAAACACAATGCA 582030 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 || || ||| | | | || || || | ||||| ||| |||| || ||||| | Sbjct 582031 AGG-TGCTTTGGACTTG-GCCTTCTCGAACAAATCCC--TCACTCTTGAAGCTCCCACTC 582086 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||| | || ||||| | || || | |||| || ||| || || || |||| Sbjct 582087 CCACAAAAAGTTCAACAAATTCTGAAGCTGCACATGAGAAGAAAGGCACGCCAGCCTCAC 582146 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | || | || || || | ||| || || || ||||| || || | | |||| || Sbjct 582147 CAGCCACAGCCCGTGCCAAAAGGGTTTTCCCAGTACCGGGTGGTCCAACCAAGAGGCAAC 582206 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || || || |||||||| || ||| | || || | ||| | ||||| |||| Sbjct 582207 CTTTCGGGATTTTGGCGCCGAGGGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACAA 582266 Query 16330 TCTCTTCCAATTC 16342 ||||| ||||| Sbjct 582267 CCTCTTGTAATTC 582279 >seq5 Length=31365312 Score = 86.0 bits (94), Expect = 8e-12 Identities = 166/239 (69%), Gaps = 7/239 (3%) Strand=Plus/Plus Query 111542 TGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTT 111601 || ||| |||||| | |||||||| |||| ||||||| || | | | || | Sbjct 24811713 TGATTACTTTGGTTTTAAGACCCTGGAGAGGTCCTACCTCTTAAAAGTACAAGGGAAGGT 24811772 Query 111602 GATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 | |||| || ||| ||||||| ||| |||| | | || || || ||| ||||| Sbjct 24811773 TGTTGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGGATTCACAAGGATGATAT 24811832 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTC-CCGTGGTATGTTCATCCACGCAACAC 111720 |||||||||| | |||||||| | | |||||| | | ||| ||||| || || | | Sbjct 24811833 TGATTCTGTTATCAAGACATACCATATGATGTCTCAGCGGT-GGTTCACTCATGCTTCTC 24811891 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCAA--ATGTCCAGTTGTTTCCTTATTG 111777 | ||||| || || || || |||||||| || ||| |||| || ||||| |||||| Sbjct 24811892 CCACCCTTTTTAATGCAGGAACACCAAGGCCTCAAGTATGTGTAG-TGTTT--TTATTG 24811947 >seq2164 Length=5404 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 111542 TGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTT 111601 || ||| |||||| | |||||||| |||| ||||||| || | | | || | Sbjct 4667 TGATTACTTTGGTTTTAAGACCCTGGAGAGGTCCTACCTCTTAAAAGTACAAGGGAAGGT 4608 Query 111602 GATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATAT 111661 | |||| || ||| ||||||| ||| |||| | | || || || ||| ||||| Sbjct 4607 TGTTGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGGATTCACAAGGATGATAT 4548 Query 111662 TGATTCTGTTTTGGAGACATACGACAAGATGTC-CCGTGGTATGTTCATCCACGCAACAC 111720 |||||||||| | |||||||| | | |||||| | | ||| ||||| || || | | Sbjct 4547 TGATTCTGTTATCAAGACATACCATATGATGTCTCAGCGGT-GGTTCACTCATGCTTCTC 4489 Query 111721 CAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||||| || || || || |||||||| || || Sbjct 4488 CCACCCTTTTTAATGCAGGAACACCAAGGCCTCA 4455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620705240808080