Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq4 132 6e-26 seq6 95.1 1e-14 seq2164 84.2 3e-11 seq5 82.4 9e-11 >seq4 Length=30445767 Score = 132 bits (146), Expect = 6e-26 Identities = 225/320 (70%), Gaps = 12/320 (4%) Strand=Plus/Plus Query 9243 TTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCA 9300 || || || || | ||||| ||||| |||| | || ||||||| ||||| ||||||| Sbjct 26227833 TTAGTAGCTGCAACGACAATGATACCAGTGTTGCCTT--CAAAACCGTCCATTTCTGTCA 26227890 Query 9301 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGC 9357 |||||||||||| || ||||| | ||||||||| || |||| |||| || | Sbjct 26227891 AAAGTTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CCACCAATTCCAGTACCTC 26227947 Query 9358 GTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 9417 |||| |||| || |||||||| ||||||| || ||||| || ||| ||| || || Sbjct 26227948 TTTGCCTTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGG 26228007 Query 9418 CGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9477 | | | ||| ||||| || || | || || |||||||||||||| || ||||| | Sbjct 26228008 CCTTCTTAAAAAGATCACGCACTCGAGAAGCACCAACACCAACAAACATTTCTACAAACT 26228067 Query 9478 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9536 | | ||| || | | || || ||| || ||| || ||||| || ||| || Sbjct 26228068 CAGAACCTGAA-ATGGAAAAAAATGGAACACCAGCTTCTCCAGCAATTGCCTTGGCTAGC 26228126 Query 9537 AGAGTCTTACCCGTACCTGG 9556 |||||||| || || ||||| Sbjct 26228127 AGAGTCTTTCCAGTTCCTGG 26228146 >seq6 Length=25259912 Score = 95.1 bits (104), Expect = 1e-14 Identities = 246/370 (66%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTGG 9340 || ||||||||||| || || || |||||||||||||| |||| |||||| ||| Sbjct 581912 AAGCCATCCATCTCAGTTAAGAGCTGGTTAATAGTTTGCTCCCTCTCATCATTTCCACCT 581971 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | || ||| || | | ||| | || || |||||||||||||| || || ||||| || Sbjct 581972 CCTA-GACCTGCCCCTCTCTGCCTCCCAACAGCATCAATCTCATCTATAAACACAATGCA 582030 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || || ||| | ||| | || || | ||| | || ||| || ||||| || | Sbjct 582031 AGG-TGCTTTGGACTTGGCCTTCTCGAACAAATCCCTCACTCTTGAAGCTCCCACTCCCA 582089 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||| | || ||||| | || || | |||| || ||| || || || ||||| | Sbjct 582090 CAAAAAGTTCAACAAATTCTGAAGCTGCACATGAGAAGAAAGGCACGCCAGCCTCACCAG 582149 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 | | || || || | ||| || || || ||||| || || | | |||| ||| Sbjct 582150 CCACAGCCCGTGCCAAAAGGGTTTTCCCAGTACCGGGTGGTCCAACCAAGAGGCAACCTT 582209 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 || || |||||||| || ||| | || || | ||| | ||||| |||| || Sbjct 582210 TCGGGATTTTGGCGCCGAGGGCAGTGTACTTATCTGGGTTCTTCAAGAAATCAACAACCT 582269 Query 9640 CTTCCAATTC 9649 ||| ||||| Sbjct 582270 CTTGTAATTC 582279 >seq2164 Length=5404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| || |||||||| || ||||| || ||||| || | || ||| ||||| | || Sbjct 4454 CTGAGGCCTTGGTGTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTG 4513 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | | |||||||| | ||||||||||| || ||| ||| || || | | Sbjct 4514 AGACATCATATGGTATGTCTTGATAACAGAATCAATATCATCCTTGTGAATCCCAACAGA 4573 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||||| || || |||| | | | || | | | || |||| Sbjct 4574 AACCCTCATTAACATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTA--CTTTTAAGAGG 4631 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 ||| | |||| ||||| || | |||||||||| || | ||| | |||| Sbjct 4632 TAGGACCTCTCCAGGGTCTTAAAACCAAAGTAATCATATTCAAAATCCC 4680 >seq5 Length=31365312 Score = 82.4 bits (90), Expect = 9e-11 Identities = 156/228 (68%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || ||||| || ||||| || | || ||| ||||| | || Sbjct 24811925 TGAGGCCTTGGTGTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGA 24811866 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | | |||||||| | ||||||||||| || ||| ||| || || | | Sbjct 24811865 GACATCATATGGTATGTCTTGATAACAGAATCAATATCATCCTTGTGAATCCCAACAGAA 24811806 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 107345 || | ||| ||||||| || || |||| | | | || | | | || |||| | Sbjct 24811805 ACCCTCATTAACATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTA--CTTTTAAGAGGT 24811748 Query 107346 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || | |||| ||||| || | |||||||||| || | ||| | |||| Sbjct 24811747 AGGACCTCTCCAGGGTCTTAAAACCAAAGTAATCATATTCAAAATCCC 24811700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589945482274360