Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_015266.1 Length=40555 Score E Sequences producing significant alignments: (Bits) Value seq11 219 1e-52 >seq11 Length=20703932 Score = 219 bits (242), Expect = 1e-52 Identities = 674/1024 (66%), Gaps = 50/1024 (5%) Strand=Plus/Minus Query 35205 GTGTGGAGTCATAATTCTAGCGACCTCTTTCATCACTGGCATCACGACGCTGTTACCAAA 35264 ||| ||| ||| || | ||||| || ||||| |||| || || ||| || || Sbjct 9787711 GTGAGGAACCATGATGCGGGCGACTTCAGCGATCACCGGCACAACCACTGAGTTTCCGAA 9787652 Query 35265 TTGCCGGTACGCCTGCGTATCACTAACGGGGATTCGGTACGTATCCGGAAAGCCCATAAG 35324 || ||| || | ||||| ||| || || ||| | | || ||||||||| || Sbjct 9787651 CTGTTTGTAGGCACGGGTATCGGAAACCGGTATGCGGAAATTGTCATCAAAGCCCATCAG 9787592 Query 35325 CCGCGCACATTCGCGAGGCGTCAGGCGCCGCGGACGCTTACCTTTTC--CTTGGTAGACG 35382 || || || ||||| || ||||||||||||||| ||| ||| | ||||| ||| | Sbjct 9787591 ACGGGCGCACTCGCGCGGTGTCAGGCGCCGCGGATTCTT--CTTCGCGCCTTGGGAGATG 9787534 Query 35383 AGAATTTCCGAGCCGTCCTTGTGGTATCGAGCCGACAGCGTACGCGTTACG--CTGTCCG 35440 || || ||||| || ||||||| ||| || || ||||| || ||| ||| || || | Sbjct 9787533 AGGATCTCCGAACCATCCTTGTAGTAGCGCGCAGACAGTGT--GCGGCACGTACTTTCGG 9787476 Query 35441 GATAGGCCATGCCAAATCCAAAGCCGTTACCCGCCGCGCGATGCTTCTCGGCATATGCTT 35500 | ||| ||| || || || ||||| ||| | |||||||| | ||||| | Sbjct 9787475 GGGTTACCAGGCCGAAACCGAAACCGTTGCCCTTGTCACGATGCTTGGCTGCATAGTTCT 9787416 Query 35501 GTAGGTACGTCCAGAGGTTCGGCGTCAGGGTGTACTTGGATTGGACCTTGCGCTTTTCGT 35560 | | |||| ||| || || || || ||||||||| | ||||||| || || Sbjct 9787415 GCAAGTACTCCCACAGCTTGTCCGACAACGTGTACTTGTCCAGCACCTTGCCTTTGGCGC 9787356 Query 35561 GATCAAAAAATCTCTCACCGTCCCACGGAAGAACTGGCTCGCTGCCGTCAGTCTTGTGCA 35620 ||| | | | | || || ||||| ||||| |||||| | Sbjct 9787355 CGGCAATGTAGGGTTGATCCTCGT---------CT---TCGCTACCGTCCTGCTTGTGTA 9787308 Query 35621 AAATCGAAGCGAGACGAGGCCCATCTGCC---GGCAAGC-GC---AGATCGTCCCATGAG 35673 | || || | || || | |||| | || || || || ||||| | | | Sbjct 9787307 GCACGGAGGCCATGCGGGGGGAAA-TGCCAAAGTCAGGCAGCTCGAGGTCGTCGAAAGTG 9787249 Query 35674 AAGCCGGTCTTCTTC-CGGAATCCGACGATGACGATTCGCTCACGATGCTGAGGGGTGAA 35732 || |||||| |||| ||||| || ||||||| ||||||||| |||||||||||| ||| Sbjct 9787248 AACGCGGTCT-CTTCACGGAAGCCTACGATGATGATTCGCTCGCGATGCTGAGGGCCGAA 9787190 Query 35733 GTGCTGGCCGTCGATGATCTTGTAATGGACGTCATACTGGAGCTCG----TCACGCAACG 35788 ||||| ||||| ||||| |||| || |||| ||| || ||| ||| ||| || Sbjct 9787189 GTGCTTGCCGTTGATGACCTTGGCTTGCACGTGATAGCCCAGTTCGCTCTTCA-GCA-CG 9787132 Query 35789 TTTGCAAGATAACGGCAAAAGTGTTGCCTTTATCGTGCGACAACAAATTCTTCACGTTTT 35848 | || ||| | || ||| ||| || ||||| || || ||||||||||||| Sbjct 9787131 TC--CATGATTGTTGAGAACGTGCGGCCCTTGTCGTGGCTCATCAGGTTCTTCACGTTTT 9787074 Query 35849 CCAACACGAAGGCCGCAGGTCGCTTCGCTGCGATGATCCGGGCTACGTCGAAAAATAGAG 35908 ||| | ||| || || ||||| || ||||||| || || |||||||| || | | Sbjct 9787073 CCAGGAGGAAAGCGCGTGGACGCTTGGCGTCGATGATGCGCGCCACGTCGAAGAACAACG 9787014 Query 35909 TGCCCTGAGTAGTGCACTCGAAGCCGTGCGGGCGGCCCAGTGAGTTCTTTTTGCTTACTC 35968 ||||||| || || |||||||||||| || || || |||||||| ||| || | Sbjct 9787013 TGCCCTGTGTCTTGTCGGAGAAGCCGTGCGGACGTCCAAGGGAGTTCTTCTTGGACACAC 9786954 Query 35969 CCGCGATACTAAACGGCTGGCAAGGGAAGCCGGCAAGCAAGACGTCATGAGTTGGCAC-A 36027 | || || || |||||||||||||||||||| |||| || || || ||||| Sbjct 9786953 CGGCAATGGAGAAGGGCTGGCAAGGGAAGCCGGCCAGCAGCACATCGTGGTCCGGCACGT 9786894 Query 36028 CTTTCGGCCGCGAATGGGACGATGTCACCGATGAAAGGATGAT------GGTCGCCGAAG 36081 | ||| || | || |||||| | |||| || | |||| |||| Sbjct 9786893 CGTTCTCGTGCACCTTGG-TGATGTCCGAGGCGAAAACGTGGTCGGGGCCGTCGTGGAAG 9786835 Query 36082 TTATCGACGTACGTCTT--CTTCGAAAAGTCGTTCCACTCGCTAGTGAATACGCATTCAC 36139 || | ||| ||||| | || | | | ||| ||||| |||||||| || || Sbjct 9786834 TTGGCCTTGTATGTCTTTACAGCGTACGG--ATCCCATTCGCTGGTGAATACACAGCGAC 9786777 Query 36140 CGCCATGAGCCTCAAAACCAAGGCGAATGCCACCGATTCCGGCGAACAGATCGATGAAAC 36199 |||| || ||| ||| || || ||||||||||| || ||||||||||||||||| | Sbjct 9786776 CGCCCTGCTTCTCGAAAGCAGTACGGATGCCACCGATGCCTGCGAACAGATCGATGAATC 9786717 Query 36200 GGAA 36203 |||| Sbjct 9786716 GGAA 9786713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129647026635306