Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2164 98.7 1e-15 seq5 98.7 1e-15 seq8 95.1 1e-14 >seq2164 Length=5404 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| |||||| | || ||||| |||||| | ||||| || || | || | Sbjct 4467 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 4526 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| | ||||||||||| ||||| | ||| || || || | ||| || | |||||| Sbjct 4527 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 4585 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| || | || ||| || || || || | |||| Sbjct 4586 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 4645 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 || ||||||||||| || | ||| ||| || |||||| Sbjct 4646 GGTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCAT 4686 >seq5 Length=31365312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||| |||||| | || ||||| |||||| | ||||| || || | || | Sbjct 24811913 GTTCCTGCATTAAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCATATGG 24811854 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 ||||| | ||||||||||| ||||| | ||| || || || | ||| || | |||||| Sbjct 24811853 TATGTCTTGATAACAGAATCAATATCATCCTTG-TGAATCCCAACAGAAACCCTCATTAA 24811795 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||||| |||||||||| || | || ||| || || || || | |||| Sbjct 24811794 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGTACTTTTAAGAGGTAGGACCTCTCCAG 24811735 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCAT 48819 || ||||||||||| || | ||| ||| || |||||| Sbjct 24811734 GGTCTTAAAACCAAAGTAATCATATTCAAAATCCCTATCAT 24811694 >seq8 Length=23350829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||||||||| || | || ||||| |||||| | ||||| || || | ||| | Sbjct 17135912 GTTCCTGAATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGGGACATCAAGTGG 17135853 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||| ||| ||||||| ||||| | ||| | |||| || || | ||| ||| Sbjct 17135852 TATGTTTTGATAGCAGAATCAATATCATCCTTATGAGTTCCTACAGCAACCCTCATCAAC 17135793 Query 48720 ATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAAT 48779 |||| |||||| |||||||||| || | || ||| || || || || | || | Sbjct 17135792 ATATGTTGAGGCCTTTCAACAACCTTCCCCTGTACTTTTAAGAGGTAGGACCTCTCAAGG 17135733 Query 48780 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || || |||||||| || | || |||||| |||| | ||| || Sbjct 17135732 GTCTTGAAACCAAAGTAATCATAGTCAAAGTCCCTATCGTAAATTAT 17135686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562075150761960