Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12 114 1e-20 seq3 111 1e-19 seq38 109 4e-19 seq1 102 6e-17 seq4 95.1 9e-15 >seq12 Length=19346091 Score = 114 bits (126), Expect = 1e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 17382504 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAA 17382445 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| |||| ||||||||||| ||| || ||| ||| Sbjct 17382444 GATAAGACGCTGCTGATCCGGCGGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACATT 17382385 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| ||||||||||| || ||||| || || |||| || || || Sbjct 17382384 GTCAATGGTATCTGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCAGTCAGGGTCTTCAC 17382325 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 17382324 AAAGATCTGCATC 17382312 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| || ||||| | || | ||| | || ||||||||||| || ||||| Sbjct 17399845 CTCCTTCTGAATGTTATAATCGGCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAA 17399786 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| |||| ||||||||||| |||||| ||| ||| Sbjct 17399785 GATGAGGCGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATT 17399726 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || |||| || || || Sbjct 17399725 GTCAATGGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCAGTCAGGGTCTTCAC 17399666 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 17399665 GAAGATCTGCAT 17399654 >seq3 Length=26737297 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||| |||| ||| ||| | | || |||| |||||| || |||||| Sbjct 2107234 TCCTTTTGGATATTGTAGTCAGCTAGTGTTCTACCATCCTCCAGCTGCTTTCCAGCAAAT 2107175 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || |||| ||| ||||| | |||| ||||||||||| ||||||| || || | Sbjct 2107174 ATAAGTCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTA 2107115 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || || ||||| |||||||| || ||| Sbjct 2107114 TCTATGGTATCAGAACTCTCCACCTCAAGTGTGATAGTCTTTCCAGTCAAAGTCTTGACA 2107055 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 2107054 AAGATTTGCAT 2107044 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||| |||||||| |||| ||| ||| | | || |||| |||||| || |||||| Sbjct 2755220 TCCTTTTGGATATTGTAGTCAGCTAGTGTTCTACCATCCTCCAGCTGCTTTCCAGCAAAT 2755279 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | |||| ||||||||||| ||||||| || || | Sbjct 2755280 ATAAGCCTCTGCTGATCTGGAGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTGACGTTA 2755339 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || || ||||| |||||||| || ||| Sbjct 2755340 TCTATGGTATCAGAACTCTCCACCTCAAGTGTGATAGTCTTTCCAGTCAAAGTCTTGACA 2755399 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 2755400 AAGATTTGCAT 2755410 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| |||||||||| ||| | | | | || |||| |||||| || || ||| Sbjct 2107006 TCCTTCTGAATGTTGTAATCAGCAAGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAAT 2106947 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | ||||| ||||| ||||| ||||| || ||| Sbjct 2106946 ATAAGCCTCTGCTGATCAGGGGGAATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTG 2106887 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || |||||||| |||| || || ||| Sbjct 2106886 TCAATTGTATCAGAACTCTCCACCTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACA 2106827 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 2106826 AAAATCTGCAT 2106816 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| |||||||||| ||| | | | | || |||| |||||| || || ||| Sbjct 2755448 TCCTTCTGAATGTTGTAATCAGCAAGAGTCCTACCATCCTCCAGCTGCTTTCCAGCGAAT 2755507 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | ||||| ||||| ||||| ||||| || ||| Sbjct 2755508 ATAAGCCTCTGCTGATCAGGGGGAATACCCTCTTTGTCCTGTATCTTAGTCTTGACATTG 2755567 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || |||||||| |||| || || ||| Sbjct 2755568 TCAATTGTATCAGAACTCTCCACCTCAAGGGTGATGGTTTTTCCAGTCAGGGTCTTAACA 2755627 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 2755628 AAAATCTGCAT 2755638 >seq38 Length=323574 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 34848 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAA 34789 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| |||| ||||||||||| ||| || ||| ||| Sbjct 34788 GATGAGACGCTGCTGATCCGGTGGAATACCCTCCTTGTCCTGAATTTTAGCTTTCACATT 34729 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || |||| || || || Sbjct 34728 GTCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCAGTCAGGGTCTTCAC 34669 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 34668 AAAGATCTGCATC 34656 Score = 105 bits (116), Expect = 5e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | ||| | || ||||||||||| || ||||| Sbjct 53114 CTCCTTCTGAATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAACTGCTTCCCAGCAAA 53055 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||| | |||| ||||||||||| |||||| ||| ||| Sbjct 53054 GATGAGGCGCTGCTGATCAGGTGGAATACCCTCCTTGTCCTGAATCTTAGCTTTCACATT 52995 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| || ||||| || || |||| || || || Sbjct 52994 GTCAATGGTATCCGAGCTCTCCACCTCCAGAGTGATCGTCTTCCCAGTCAGGGTCTTCAC 52935 Query 48755 AAAAATCTGCATC 48767 || ||||||||| Sbjct 52934 GAAGATCTGCATC 52922 >seq1 Length=42390363 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| |||||||||| ||| ||| | || |||||||| Sbjct 13906946 ATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTTCTTCCATCCTCCAACTG 13907005 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| | |||||| || | || | |||||||| || |||||| Sbjct 13907006 CTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTT 13907065 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | | || || || |||||| |||| || || || ||||| || Sbjct 13907066 AGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACTTCCAGAGTGATGGTCTTTCCAGT 13907125 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||| || ||||| |||||||| Sbjct 13907126 GAGAGTCTTCACAAAGATCTGCAT 13907149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || ||||| ||||| |||| || | | | || || Sbjct 34330256 ACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTCCCATCCTCG 34330197 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||||||| || || || || | ||| ||||| | ||||| ||||||||||| | Sbjct 34330196 AGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGA 34330137 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || || ||||||| || || ||||| Sbjct 34330136 ATCTTCGCCTTGACATTGTCAATGGTGTCCGAGCTTTCAACCTCCAAAGTGATGGTTTTC 34330077 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||||||||| Sbjct 34330076 CCTGTCAAAGTCTTAACGAAAATCTGCAT 34330048 >seq4 Length=30445767 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| ||||| | |||| ||| || || ||| || ||||| ||||| | | Sbjct 3595661 CCGCCCCTGAGCCGTAGAACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTTGGCC 3595602 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || |||| |||| ||| || ||||| || || |||||||||||||| | ||| Sbjct 3595601 AAAGTCCGGCCGTCCTCCAGCTGTTTTCCGGCGAAGATGAGTCGCTGTTGATCAGGAGGA 3595542 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| ||| || | | | || |||| ||| ||| Sbjct 3595541 ATTCCTTCCTTGTCTTGTATCTTCGCTTTCACGTTGTCGATGGTGTCCGACGACTCAACC 3595482 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||| | ||||| || ||||| ||||| Sbjct 3595481 TCTATGGTTATGGTCTTGCCCGTAAGGGTTTTCACGAAAATTTGCAT 3595435 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| ||||| | || | ||| || || ||| || ||||| ||||| | | Sbjct 2276546 CCGCCCCTGAGCCGTAGAACTAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTTGGCC 2276487 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | || |||| |||| ||| || ||||| || || |||||||||||||| | | | Sbjct 2276486 AAAGTCCGGCCGTCCTCCAGCTGTTTTCCGGCGAAGATGAGTCGCTGTTGATCAGGAGAA 2276427 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||||| ||| || | | | || |||| ||| ||| Sbjct 2276426 ATTCCTTCCTTGTCTTGTATCTTCGCTTTCACGTTGTCGATGGTGTCCGACGACTCAACC 2276367 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || ||||| | ||||| || ||||| ||||| Sbjct 2276366 TCTATGGTTATGGTCTTGCCCGTAAGGGTTTTCACGAAAATTTGCAT 2276320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380915366219847