Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9 140 6e-28 >seq9 Length=25348792 Score = 140 bits (154), Expect = 6e-28 Identities = 382/580 (66%), Gaps = 19/580 (3%) Strand=Plus/Minus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || ||||| | |||||| || ||||| || ||| | | |||| ||| Sbjct 24571353 TAAAGCAAGCACGCGAAGTCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTCGAG 24571294 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || ||| || ||||| | ||| | || || ||||| || || || ||| || Sbjct 24571293 AAAGTGAGCCCGGGCATCAACCCGCGCTTCTTCAGCCAAAATATCGCGCAGAAGCTCCCC 24571234 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 || ||||| || |||||||| ||||| || | | ||| |||| || || | Sbjct 24571233 GAAAAGAAAATCCCCTCCACGCAAGCGAAAGCAACCAAACGCTCCGCGAACGATTCGGTG 24571174 Query 48302 TTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCT 48361 ||| |||||| || ||||| || |||||||| | || || | ||||| Sbjct 24571173 CCGTC---GATCCACCGGAGGGCCCATTCGGCCTTCTTGGCCACACAAGGGACGGTCTCG 24571117 Query 48362 ATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA-- 48416 ||||| |||| ||| ||||| ||| | | ||| | |||||| ||||| Sbjct 24571116 ATGGCATGGAAAAGCCGGTTCTT---CTCGACCGGGTCTTTGATATAGGTTTCGAGCAAG 24571060 Query 48417 --GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGC 48474 ||| | |||| || ||||| | ||||||||| || |||||||| || ||||| || Sbjct 24571059 AGGCTAT----ACATTTCGGAGTGGATATTCTCTATGGCAATCTGGAAGCCATAGAAAGC 24571004 Query 48475 CCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTA 48533 | ||||| ||||| || || | ||| ||| || || |||||||| || | Sbjct 24571003 GCGAGCCTCTGCGACCTGAACCTCCTTCATGAACCTC-CCGGCGAGATTCTCCAAAACGA 24570945 Query 48534 TCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGG 48593 | || ||||| ||||||||||| || || ||||| || ||| || ||||| | ||| Sbjct 24570944 TGCCGTCTGAGGCAGCAAAGAAAGCGAGCACATGCGAAATGAAGTGCTTCTCGTCGGGGG 24570885 Query 48594 TGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGG 48653 | || | |||| | || || | ||||| || || || | |||||||||| Sbjct 24570884 TTAGGTTTTCCCAGTGACGAACATCCTGAGAGAGGTCGACCTCCTCGGCGGTCCAGAAGG 24570825 Query 48654 ACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 | || ||||| |||||||| |||| || | ||| || Sbjct 24570824 AGGCCTCGGCTTTCTTGTACATTTCCCAGATTTGCGGGTA 24570785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931477036117760