Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 127 4e-24 >seq9 Length=25348792 Score = 127 bits (140), Expect = 4e-24 Identities = 379/573 (66%), Gaps = 15/573 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || | ||| |||||||||||| ||| | || || Sbjct 24570794 ATCTGGGAAATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGACCTC 24570853 Query 25537 GCCAAGGACATGGACGGC--TGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT 25594 | |||| || || | ||| | ||| || |||||| |||| || | | Sbjct 24570854 TCTCAGGA--TGTTCGTCACTGGGAAAACCTAACCCCCGACGAGAAGCACTTCATTTCGC 24570911 Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 | ||| | || |||||||| ||||| || || || || |||||||| || ||| | Sbjct 24570912 ATGTGCTCGCTTTCTTTGCTGCCTCAGACGGCATCGTTTTGGAGAATCTCGCCGGGAGGT 24570971 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| | ||| || ||| || ||||| |||||| || |||||||| ||||| | Sbjct 24570972 TCATGAAGGAGGTTCAGGTCGCAGAGGCTCGCGCTTTCTATGGCTTCCAGATTGCCATAG 24571031 Query 25715 AAAATGTGCACTCTGAGGTGTAT-GCCAAGCTT-CTGATGACGTACATTACAGACGTCGC 25772 | ||| | ||||| || ||||| ||| ||| || || || || | |||| | Sbjct 24571032 AGAATATCCACTCCGAAATGTATAGCCT--CTTGCTCGAAACCTATATCAAAGACCCGGT 24571089 Query 25773 CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCG 25832 ||||| | ||||| || |||||||||| | | || | | | |||||| Sbjct 24571090 CGAGAAGAACCGGCTTTTCCATGCCATCGAGACCGTCCCTTGTGTGGCCAAGAAGGCCGA 24571149 Query 25833 GTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTT 25892 |||||| | ||||||| || || | || |||| | ||||| |||| || || Sbjct 24571150 ATGGGCCCTCCGGTGGATCGACGGC---ACCGAATCGTTCGCGGAGCGTTTGGTTGCTTT 24571206 Query 25893 TGCTGCTGTGGAGGGCATCTT-TTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||| |||||||| || || ||| | || | | |||| | || || ||||| ||| Sbjct 24571207 CGCTTGCGTGGAGGGGATTTTCTTTTCGGGGAGCTTCTGCG-CGATATTTTGGCTGAAGA 24571265 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || ||| ||||||||||| ||||| || |||||| | ||| | ||||||||| Sbjct 24571266 AGCGCGGGTTGATGCCCGGGCT-CACTTTCTCGAACGAGTTGATCTCGCGAGACGAGGGT 24571324 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 | ||| | || || || ||| |||| |||||| Sbjct 24571325 TTGCACTGCGACTTCGCGTGCTTGCTTTACACG 24571357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928789197028160