Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 >seq3 Length=26737297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || ||||| ||||| || ||| ||| Sbjct 2107500 ATGCAAATTTTTGTGAAAACTCTGACTGGCAAAACAATTACTCTTGAGGTGGAGAGTTCG 2107559 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| ||||||||||| | || ||||| Sbjct 2107560 GACACAATCGACAATGTGAAGGCGAAAATCCAAGACAAAGAGGGGATCCCTCCTGATCAG 2107619 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| ||||| ||| |||| ||| ||| ||||||| |||||| Sbjct 2107620 CAGAGGCTTATTTTTGCCGGCAAGCAACTGGAGGATGGGCGCACTCTGGCCGACTATAAC 2107679 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| || ||| || ||| Sbjct 2107680 ATCCAAAAGGAGAGTACACTCCAC 2107703 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| ||| || ||| ||| Sbjct 2106815 AATGCAGATTTTTGTTAAGACCCTGACTGGAAAAACCATCACCCTTGAGGTGGAGAGTTC 2106874 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || || ||||||||||| | ||| ||||| Sbjct 2106875 TGATACAATTGACAATGTCAAGACTAAGATACAGGACAAAGAGGGTATTCCCCCTGATCA 2106934 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||| || || || || || |||| ||| || ||| | || ||||| || Sbjct 2106935 GCAGAGGCTTATATTCGCTGGAAAGCAGCTGGAGGATGGTAGGACTCTTGCTGATTACAA 2106994 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||| || ||||| ||| |||| Sbjct 2106995 CATTCAGAAGGAATCCACTTTGCA 2107018 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | || || ||||| ||||| || ||| ||| Sbjct 2754954 ATGCAAATTTTTGTGAAAACTCTGACTGGCAAAACAATTACTCTTGAGGTGGAGAGTTCG 2754895 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| |||||| ||||||||||| | || ||||| Sbjct 2754894 GACACAATCGACAATGTGAAGGCGAAAATCCAAGACAAAGAGGGGATCCCTCCTGATCAG 2754835 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||| ||||| ||||| ||| |||| ||| ||| |||| || |||||| Sbjct 2754834 CAGAGGCTTATTTTTGCCGGCAAGCAACTGGAGGATGGGCGCACTCTGGCTGACTATAAC 2754775 Query 28734 ATTCAAAAAGAATCTACTCTGCAC 28757 || ||||| || ||| || ||| Sbjct 2754774 ATCCAAAAGGAGAGTACACTCCAC 2754751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || |||||||| ||| || ||| ||| Sbjct 2755639 AATGCAGATTTTTGTTAAGACCCTGACTGGAAAAACCATCACCCTTGAGGTGGAGAGTTC 2755580 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || || ||||||||||| | ||| ||||| Sbjct 2755579 TGATACAATTGACAATGTCAAGACTAAGATACAGGACAAAGAGGGTATTCCCCCTGATCA 2755520 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||| || || || || || |||| ||| || ||| | || ||||| || Sbjct 2755519 GCAGAGGCTTATATTCGCTGGAAAGCAGCTGGAGGATGGTAGGACTCTTGCTGATTACAA 2755460 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 |||||| || ||||| ||| |||| Sbjct 2755459 CATTCAGAAGGAATCCACTTTGCA 2755436 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| ||||| | || || || || |||||| || ||| || Sbjct 2106588 ATGCAAATATTTGTGAAAACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAGAGCTCC 2106647 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || ||||| || || ||||| |||||| | || || ||| Sbjct 2106648 GATACTATTGACAATGTCAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCTGACCAA 2106707 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||||||||| || || || ||||| ||||| ||| || || | || || |||||| Sbjct 2106708 CAGAGACTTATATTCGCTGGAAAACAGTTGGAGGATGGTAGGACCCTTGCTGACTATAAC 2106767 Query 28734 ATTCAAAAAGAATCTACTCTGCA 28756 ||||| || || || || |||| Sbjct 2106768 ATTCAGAAGGAGTCCACCTTGCA 2106790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425379970850031