Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 seq2164 93.3 5e-14 seq5 91.5 2e-13 >seq4 Length=30445767 Score = 100 bits (110), Expect = 3e-16 Identities = 266/403 (66%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||| | ||| |||| ||||| | || ||| || ||||| Sbjct 26228230 GAGGTGGTGGAGTTTTTGAAGAAACCTGAGAGGTTCACTGCGGTTGGGGCTCGCATCCCT 26228171 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| ||||| || |||||||| || || ||| || || Sbjct 26228170 AAAGGAGTTCTTCTTGTTGGTCCCCCAGGAACTGGAAAGACTCTGCTAGCCAAGGCAATT 26228111 Query 175351 GCGGGTGAATCAAATGTCCCATTCAT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| | ||| ||||| | ||| | || | | | ||||| || |||| Sbjct 26228110 GCTGGAGAAGCTGGTGTTCCATTTTTTTCCATT--TCAGGTTCTGAGTTTGTAGAAATGT 26228053 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| ||||| | || || ||||| ||| | | ||| || ||| || Sbjct 26228052 TTGTTGGTGTTGGTGCTTCTCGAGTGCGTGATCTTTTTAAGAAGGCCAAGGAGAATGCAC 26227993 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TG 175525 | || ||||| || ||||||| |||||||| || || | |||| | | |||| || Sbjct 26227992 CTTGCATTGTATTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGGAATTG 26227933 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 || || |||||| || |||||||| || |||| ||||| | || || ||||| | Sbjct 26227932 GT---GGAGGAAATGATGAAAGAGAACAGACCCTTAACCAACTTTTGACAGAAATGGACG 26227876 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAA 175628 | ||||| | ||||| || | || |||| || ||||| Sbjct 26227875 GTTTTGAAGGCAACACTGGTATCATTGTCGTTGCAGCTACTAA 26227833 >seq2164 Length=5404 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||| | ||| | || |||||||||| | || ||||| |||| | ||| |||| || | Sbjct 4680 GGGATTTTGAATATGATTACTTTGGTTTTAAGACCCTGGAGAGGTCCTACCTCTTAAAAG 4621 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | || | | | |||| || ||| ||||||| ||| |||| | | || || Sbjct 4620 --TACAAGGGAAGGTTGTTGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGGAT 4563 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || ||||||||||| | |||||||| | | |||||| || | ||| Sbjct 4562 TCACAAGGATGATATTGATTCTGTTATCAAGACATACCATATGATGTCTCAGCGGTGGTT 4503 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 || ||| || | || ||||| || ||||| || |||||||| || ||| Sbjct 4502 CACTCATGCTTCTCCCACCCTTTTTAATGCAGGAACACCAAGGCCTCAG 4454 >seq5 Length=31365312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||| | ||| | || |||||||||| | || ||||| |||| | ||| |||| || | Sbjct 24811700 GGGATTTTGAATATGATTACTTTGGTTTTAAGACCCTGGAGAGGTCCTACCTCTTAAAAG 24811759 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | | || | | | |||| || ||| ||||||| ||| |||| | | || || Sbjct 24811760 --TACAAGGGAAGGTTGTTGAAAGGCCTCAGCACATGTTAATGAGGGTTTCTGTTGGGAT 24811817 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| || ||||||||||| | |||||||| | | |||||| || | ||| Sbjct 24811818 TCACAAGGATGATATTGATTCTGTTATCAAGACATACCATATGATGTCTCAGCGGTGGTT 24811877 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || ||||| || ||||| || |||||||| || || Sbjct 24811878 CACTCATGCTTCTCCCACCCTTTTTAATGCAGGAACACCAAGGCCTCA 24811925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533887852320