Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq256 95.1 2e-14 seq3 93.3 6e-14 seq1 84.2 3e-11 >seq256 Length=127809 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/115 (79%), Gaps = 4/115 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || |||||||||||||||| ||| |||||||| | Sbjct 84923 CAGGATAAGGAAGGCATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAGCAATTG 84864 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCA 156025 |||||| ||||| | ||||||||| | ||||||| ||| |||| ||||| Sbjct 84863 GAAGATGGACGAACTCTTGCAGATTATA--ACATCCAAAAGGAGTCGACTCTTCA 84811 >seq3 Length=26737297 Score = 93.3 bits (102), Expect = 6e-14 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||| ||||| ||| | || || || ||| Sbjct 2107043 AATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACACTTGAGGTGGAGAGTTC 2107102 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||||| || || || || || || || || || |||||||| || Sbjct 2107103 TGATACCATAGATAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGATCA 2107162 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| | || | ||| || |||||||| || ||| ||||| || | || || | Sbjct 2107163 GCAGAGACTTATATTTGCTGGAAAGCAGCTGGAGGATGGTAGAACACTAGCTGACTACA- 2107221 Query 156002 TATATCCAAA 156011 ||||||||| Sbjct 2107222 -ATATCCAAA 2107230 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| ||||| || || || | || || || ||| Sbjct 2107272 ATGCAAATTTTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 2107331 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || || ||||| ||||| ||||| || || || Sbjct 2107332 GATACGATAGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGGATACCACCTGATCAG 2107391 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||||||||| ||| ||| ||||| ||||||||||| Sbjct 2107392 CAGAGGCTTATCTTTGCAGGAAAGCAGCTCGATGATGGCAGGACTTTGGCAGATTATAAT 2107451 Query 156003 AT 156004 || Sbjct 2107452 AT 2107453 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| ||||| || || || | || || || ||| Sbjct 2755182 ATGCAAATTTTTGTCAAGACTTTGACGGGAAAGACCATCACTCTTGAGGTTGAGAGCTCT 2755123 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || || || || ||||| ||||| ||||| || || || Sbjct 2755122 GATACGATAGACAATGTCAAGGCAAAGATCCAGGATAAGGAAGGGATACCACCTGATCAG 2755063 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||||||||| ||| ||| ||||| ||||||||||| Sbjct 2755062 CAGAGGCTTATCTTTGCAGGAAAGCAGCTCGATGATGGCAGGACTTTGGCAGATTATAAT 2755003 Query 156003 AT 156004 || Sbjct 2755002 AT 2755001 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||| ||||| ||| | || || || ||| Sbjct 2755411 AATGCAAATCTTTGTCAAGACTTTGACTGGAAAGACTATCACACTTGAGGTGGAGAGTTC 2755352 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||||| || || || || || || || || || |||||||| || Sbjct 2755351 TGATACCATAGATAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATTCCTCCAGATCA 2755292 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || ||| ||||| || | || || | Sbjct 2755291 GCAGAGGCTTATATTTGCTGGAAAGCAGCTGGAGGATGGTAGAACACTAGCTGACTACA- 2755233 Query 156002 TATATCCAAA 156011 ||||||||| Sbjct 2755232 -ATATCCAAA 2755224 >seq1 Length=42390363 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| || || || || |||||||| || || Sbjct 31833931 ATGCAGATCTTTGTGAAGACCCTTACTGGGAAGACCATCACTTTAGAAGTGGAGAGCTCC 31833990 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || | ||| || || || || || || ||||||||||| || Sbjct 31833991 GATACCATTGATAATGTCAAGACTAAGATTCAGGACAAGGAGGGTATACCTCCAGACCAG 31834050 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || |||||| | || ||| || ||| | | ||||| ||| Sbjct 31834051 CAGAGGTTGATCTTTGCTGGGAAGCAGTTAGAGGATGGAAGGACTCTGGCTGATTACAAT 31834110 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 31834111 ATTCAGAAGGAGTCCACCCTTCAT 31834134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731828188312400