Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 123 5e-23 seq3 122 2e-22 seq256 95.1 2e-14 seq8 91.5 3e-13 seq9 84.2 4e-11 >seq1 Length=42390363 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | ||| | ||| || || || ||||||| Sbjct 13906922 ACCACCACGAAGACGGAGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 13906981 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | |||| | |||| ||||| || || ||||||||||| || |||||||| || ||||| Sbjct 13906982 CAGAGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGTGG 13907041 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || ||||| || || ||| ||| |||||| |||| || || || || Sbjct 13907042 GATACCCTCCTTATCCTGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTCTCCAC 13907101 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| ||||| ||||| || ||||| | || || | ||| |||||||| Sbjct 13907102 TTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 13907149 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | || | ||| || ||||| ||||||| Sbjct 31834158 ACCACCACGAAGACGGAGGACAAGATGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC 31834099 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | | |||| || || || || ||||||||||| || ||||| || || || || Sbjct 31834098 CAGAGTCCTTCCATCCTCTAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGAGG 31834039 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||| || || || || || || ||| | || |||||| || | ||| || || || Sbjct 31834038 TATACCCTCCTTGTCCTGAATCTTAGTCTTGACATTATCAATGGTATCGGAGCTCTCCAC 31833979 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||| ||||| || ||||| | || || | ||| |||||||| Sbjct 31833978 TTCTAAAGTGATGGTCTTCCCAGTAAGGGTCTTCACAAAGATCTGCAT 31833931 >seq3 Length=26737297 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | | || ||||| | |||| ||||| |||||| || || Sbjct 2106589 ATGCCACCTCTCAACCTGAGAACCAAATGAAGGGTAGATTCTTTCTGGATATTGTAGTCT 2106530 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||| | |||| || | ||||| ||||||||||| | ||||| || |||||| Sbjct 2106529 GCTAGTGTCCTGCCATCCTCAAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGT 2106470 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||| ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 2106469 GGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATGGTGTCGGAACTCTCA 2106410 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| | ||| || | |||||||||||| Sbjct 2106409 ACCTCGAGAGTGATGGTTTTCCCAGTGAGTGTCTTCACAAATATCTGCAT 2106360 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATA-CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 || |||||||| | || ||| | | ||||| | |||| ||||| ||| || || || Sbjct 2755865 ATGCCACCTCTCA-ACCTAAGAACCAAATGAAGGGTAGATTCTTTCTGGATGTTGTAGTC 2755923 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || ||| | |||| || | ||||| ||||||||||| | ||||| || ||||| Sbjct 2755924 TGCTAGTGTCCTGCCATCCTCAAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGG 2755983 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 |||||| ||||| || ||||| || ||| ||| |||||| || | || || || Sbjct 2755984 TGGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATGGTGTCGGAACTCTC 2756043 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||| |||||||| ||||| | ||| || | |||||||||||| Sbjct 2756044 AACCTCGGGAGTGATGGTTTTCCCAGTGAGTGTCTTCACAAATATCTGCAT 2756094 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | ||| | ||| ||||| | || || |||||||||||| Sbjct 2107501 ATCCCACCACGAAGGCGCAGTACAAGATGCAAAGTTGATTCCTTCTGGATATTATAATCT 2107442 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | ||||||| | || || || |||||||| | ||||| ||||||||| Sbjct 2107441 GCCAAAGTCCTGCCATCATCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGATCAGGT 2107382 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||| ||||| ||||| || || || || ||||| ||| | ||| || || Sbjct 2107381 GGTATCCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCTATCGTATCAGAGCTCTCA 2107322 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || || || || | ||| || ||||| Sbjct 2107321 ACCTCAAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACAAAAATTTGCAT 2107272 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || | ||| | ||| ||||| | || || |||||||||||| Sbjct 2754953 ATCCCACCACGAAGGCGCAGTACAAGATGCAAAGTTGATTCCTTCTGGATATTATAATCT 2755012 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | ||||||| | || || || |||||||| | ||||| ||||||||| Sbjct 2755013 GCCAAAGTCCTGCCATCATCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGATCAGGT 2755072 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 ||||| ||||| ||||| || || || || ||||| ||| | ||| || || Sbjct 2755073 GGTATCCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCTATCGTATCAGAGCTCTCA 2755132 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || || || || | ||| || ||||| Sbjct 2755133 ACCTCAAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACAAAAATTTGCAT 2755182 >seq256 Length=127809 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || ||||| | || || | || | ||| | ||| || ||| |||||||| | Sbjct 84787 CCTCCCCTAAGCCTCAAGACCAGGTGAAGAGTCGACTCCTTTTGGATGTTATAATCTGCA 84846 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | |||||| |||| |||||||| ||||||||||| || ||||| ||||||||||| || Sbjct 84847 AGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGATCAGGAGGG 84906 Query 192430 ATTCCTTCTTTATCTTG 192446 || ||||| ||||| || Sbjct 84907 ATGCCTTCCTTATCCTG 84923 >seq8 Length=23350829 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATA-CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| | || ||| | | ||||| | |||| ||||| |||||| | || | Sbjct 70507 CCACCTCTCA-ACCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGAAGTCTGC 70565 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||| | | |||| | | ||||| ||||||||||| | ||||| || |||||||| Sbjct 70566 TATTGTCCTTCCATCCCCGAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGG 70625 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGAT-TCT 192486 ||| ||||| | |||||||| ||| ||| ||||| || | | | || | || Sbjct 70626 TATCCCTTCCGTGTCTTGTATCTTAGCTTTGACATTGTCAATGGTGCCCGAACTCTCTCA 70685 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATA 192529 || || ||||| |||||||| || || | ||| || | ||||| Sbjct 70686 ACCTCAAGAGTCATGGTTTTCCCTGTGATTGTCTTCACAAATA 70728 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATA-CTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| | || ||| | | ||||| | |||| ||||| |||||| | || | Sbjct 4431786 CCACCTCTCA-ACCTAAGAACCAAATGAAGTGTAGATTCTTTCTGGATATTGAAGTCTGC 4431844 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || ||| | | |||| | | ||||| ||||||||||| | ||||| || |||||||| Sbjct 4431845 TATTGTCCTTCCATCCCCGAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGG 4431904 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG-ACGAT-TCT 192486 ||| ||||| | |||||||| ||| ||| ||||| || | | | || | || Sbjct 4431905 TATCCCTTCCGTGTCTTGTATCTTAGCTTTGACATTGTCAATGGTGCCCGAACTCTCTCA 4431964 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATA 192529 || || ||||| |||||||| || || | ||| || | ||||| Sbjct 4431965 ACCTCAAGAGTCATGGTTTTCCCTGTGATTGTCTTCACAAATA 4432007 >seq9 Length=25348792 Score = 84.2 bits (92), Expect = 4e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | || |||| |||| |||| ||| || || || || || | | Sbjct 3789872 GATGTTGTAATCGGCTAGGGTTCTGCCATCTTCCAGTTGCTTCCCTGCGAATATCAGCCG 3789813 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || ||||||||||| || ||||| || || || |||||| || | Sbjct 3789812 CTGCTGGTCCGGCGGTATTCCTTCCTTGTCTTGGATCTTCGCCTTCACATTATCGATGGT 3789753 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || ||||| || || ||||| || || || ||||| || | ||||| | || ||||| Sbjct 3789752 GTCCGACGACTCGACCTCTAGCGTTATTGTCTTACCCGTCAGGGTTTTCACGAAGATCTG 3789693 Query 192534 CATTTT 192539 ||| || Sbjct 3789692 CATCTT 3789687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984419593230150