Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq3 109 1e-18 seq256 91.5 3e-13 seq9 87.8 3e-12 >seq1 Length=42390363 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | ||| | ||| | ||| || ||| || ||||| | Sbjct 13906922 ACCACCACGAAGACGGAGGACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGC 13906981 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | || || | | || ||||| || || |||||||| || || ||||||||||| ||||| Sbjct 13906982 CAGAGTTCTTCCATCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGTGG 13907041 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || ||||| || || ||| ||| |||||| ||||| || || || || Sbjct 13907042 GATACCCTCCTTATCCTGAATCTTAGCTTTGACATTATCAATAGTGTCAGAGCTCTCCAC 13907101 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| ||||| ||||| || ||||| | || || | || |||||||| Sbjct 13907102 TTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 13907149 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||| ||||| || ||||| ||||| || ||||| || || || ||||| ||| Sbjct 13907232 TGCTTTCCAGCGAAAATCAACCTCTGCTGGTCCGGGGGTATACCCTCCTTGTCTTGGATT 13907291 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| || || || || ||||||||| || ||||| || || || Sbjct 13907292 TTGGCCTTCACATTATCAATGGTGTCAGAGCTTTCTACTTCAAGGGTAATAGTCTTTCCT 13907351 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| |||||||||||| Sbjct 13907352 GTGAGGGTCTTAACGAATATCTGCAT 13907377 >seq3 Length=26737297 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | | | || ||||| | |||| ||||| ||||| || ||| Sbjct 2106589 ATGCCACCTCTCAACCTGAGAACCAAATGAAGGGTAGATTCTTTCTGGATATTGTAGTCT 2106530 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || | | | || || | ||||| |||||||| || | ||||| ||||||||| Sbjct 2106529 GCTAGTGTCCTGCCATCCTCAAGCTGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGT 2106470 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||| || ||||| || ||| ||| |||||| || || || || || Sbjct 2106469 GGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATGGTGTCGGAACTCTCA 2106410 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| |||||||| ||||| | ||| || | ||||||||||| Sbjct 2106409 ACCTCGAGAGTGATGGTTTTCCCAGTGAGTGTCTTCACAAATATCTGCAT 2106360 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| |||||||| || | ||||| |||||||||||||| ||||| || ||||| || Sbjct 2755949 TGTTTCCCAGCAAAGATGAGCCTCTGCTGGTCAGGTGGTATCCCTTCCTTGTCTTGAATC 2756008 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| ||| |||||| || || || || || || || |||| |||||||| ||| Sbjct 2756009 TTAGCTTTCACATTATCAATGGTGTCGGAACTCTCAACCTCGGGAGTGATGGTTTTCCCA 2756068 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||| || | ||||||||||| Sbjct 2756069 GTGAGTGTCTTCACAAATATCTGCAT 2756094 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||| ||||| || || | |||||||||||||||||| ||||| || || Sbjct 2106742 TCCTCCAACTGTTTTCCAGCGAATATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTG 2106683 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| ||| || ||||| |||||||| || || || || || ||||| Sbjct 2106682 TCCTGTATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCACCTCAAGGGTAATA 2106623 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | ||||| | ||||| ||||| Sbjct 2106622 GTCTTGCCAGTAAGAGTTTTCACAAATATTTGCAT 2106588 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||| ||||| ||||| || || | |||||||||||||||||| ||||| || || Sbjct 2755712 TCCTCCAACTGTTTTCCAGCGAATATAAGTCTCTGTTGGTCAGGTGGGATTCCCTCCTTG 2755771 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || ||||| ||| || ||||| |||||||| || || || || || ||||| Sbjct 2755772 TCCTGTATCTTAGCCTTGACATTGTCAATAGTATCGGAGCTCTCCACCTCAAGGGTAATA 2755831 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| | ||||| | ||||| ||||| Sbjct 2755832 GTCTTGCCAGTAAGAGTTTTCACAAATATTTGCAT 2755866 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | ||| | ||| ||||| | || || |||||||||||| Sbjct 2107501 ATCCCACCACGAAGGCGCAGTACAAGATGCAAAGTTGATTCCTTCTGGATATTATAATCT 2107442 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | ||||| | || || || ||||| || | ||||| || |||||| Sbjct 2107441 GCCAAAGTCCTGCCATCATCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGATCAGGT 2107382 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||| ||||| || || || || ||||| ||| ||||| || || Sbjct 2107381 GGTATCCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCTATCGTATCAGAGCTCTCA 2107322 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || || || || | || || ||||| Sbjct 2107321 ACCTCAAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACAAAAATTTGCAT 2107272 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || | ||| | ||| ||||| | || || |||||||||||| Sbjct 2754953 ATCCCACCACGAAGGCGCAGTACAAGATGCAAAGTTGATTCCTTCTGGATATTATAATCT 2755012 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| | | ||||| | || || || ||||| || | ||||| || |||||| Sbjct 2755013 GCCAAAGTCCTGCCATCATCGAGCTGCTTTCCTGCAAAGATAAGCCTCTGCTGATCAGGT 2755072 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 ||||| ||||| ||||| || || || || ||||| ||| ||||| || || Sbjct 2755073 GGTATCCCTTCCTTATCCTGGATCTTTGCCTTGACATTGTCTATCGTATCAGAGCTCTCA 2755132 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || || || || || || | || || ||||| Sbjct 2755133 ACCTCAAGAGTGATGGTCTTTCCCGTCAAAGTCTTGACAAAAATTTGCAT 2755182 >seq256 Length=127809 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 |||| | || || ||||| | || || | || | ||| | ||| || || |||| Sbjct 84779 TCATGGTTCCTCCCCTAAGCCTCAAGACCAGGTGAAGAGTCGACTCCTTTTGGATGTTAT 84838 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || |||| | || |||||||| |||||||||||||| ||||| ||||| | Sbjct 84839 AATCTGCAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGAT 84898 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 84899 CAGGAGGGATGCCTTCCTTATCCTG 84923 >seq9 Length=25348792 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||| ||| || || || || || | | ||| ||||| || ||||||||||| || Sbjct 3789844 TCTTCCAGTTGCTTCCCTGCGAATATCAGCCGCTGCTGGTCCGGCGGTATTCCTTCCTTG 3789785 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || || || |||||| || || || ||||| || || ||||| || || Sbjct 3789784 TCTTGGATCTTCGCCTTCACATTATCGATGGTGTCCGACGACTCGACCTCTAGCGTTATT 3789725 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || | ||||| | ||| |||||||| || Sbjct 3789724 GTCTTACCCGTCAGGGTTTTCACGAAGATCTGCATCTT 3789687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905081816296200