Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ziziphus_20jujuba_20[refseq_20GCF_5F000826755.1_202015-02-06] 4,789 sequences; 437,753,511 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq486 129 2e-24 seq4 129 2e-24 seq8 116 1e-20 seq2164 98.7 3e-15 seq2 95.1 4e-14 >seq486 Length=73588 Score = 129 bits (142), Expect = 2e-24 Identities = 283/418 (68%), Gaps = 12/418 (3%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||||||||||||| || | | || || |||||||| || || ||||||||| | Sbjct 23505 TAAATCCATCCATTTCAGTCAGCAACTGGTTCAGTGTTTGCTCTCTCTCATCATTTCCTC 23564 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | |||| || || ||| | | | | ||||||||||| ||||| ||||| |||| Sbjct 23565 CACC--AATC--CCTGTTC-CTC-TCTGTCTCCCAACAGCATCTATTTCATCAATAAAAA 23618 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || || || ||||| | | || | ||||| || || || | ||| || |||| Sbjct 23619 CCAAGCATGGCGAATTGGCTTTTGCCTTGTTGAATAAATCCCTCACTCTGGAAGCCCCAA 23678 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 |||||| |||| |||| || || || | || | | ||| | || ||||| Sbjct 23679 CTCCAACAAACATCTCTATGAACTCTGATCCTGACAGAGAGAAGAAAGGAACCCCTGCTT 23738 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | || | ||||| || || ||||| || |||||||| || ||| ||||| Sbjct 23739 CTCCAGCAATGGCTTTGGCCAGCAGAGTTTTACCAGTCCCAGGTGGCCCAACTAGTAGAA 23798 Query 289238 CTCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 | |||||||| | | |||| ||| ||||| | | || || ||| | || ||||| | Sbjct 23799 CCCCCTTTGGAATTCTTGCACCAACTGCAGA---AAACTTTTCTGGGGTTTTCAAAAACT 23855 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| || | | || | ||||| |||||| |||||| ||||| |||| || Sbjct 23856 CCACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACTCCTGCCACATCGTCAAATGT 23913 >seq4 Length=30445767 Score = 129 bits (142), Expect = 2e-24 Identities = 283/418 (68%), Gaps = 12/418 (3%) Strand=Plus/Minus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 ||||||||||||| || | | || || |||||||| || || ||||||||| | Sbjct 4289457 TAAATCCATCCATTTCAGTCAGCAACTGGTTCAGTGTTTGCTCTCTCTCATCATTTCCTC 4289398 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 | | |||| || || ||| | | | | ||||||||||| ||||| ||||| |||| Sbjct 4289397 CACC--AATC--CCTGTTC-CTC-TCTGTCTCCCAACAGCATCTATTTCATCAATAAAAA 4289344 Query 289058 TCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAA 289117 || || || ||||| | | || | ||||| || || || | ||| || |||| Sbjct 4289343 CCAAGCATGGCGAATTGGCTTTTGCCTTGTTGAATAAATCCCTCACTCTGGAAGCCCCAA 4289284 Query 289118 GACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTT 289177 |||||| |||| |||| || || || | || | | ||| | || ||||| Sbjct 4289283 CTCCAACAAACATCTCTATGAACTCTGATCCTGACAGAGAGAAGAAAGGAACCCCTGCTT 4289224 Query 289178 CGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAA 289237 | || || | || | ||||| || || ||||| || |||||||| || ||| ||||| Sbjct 4289223 CTCCAGCAATGGCTTTGGCCAGCAGAGTTTTACCAGTCCCAGGTGGCCCAACTAGTAGAA 4289164 Query 289238 CTCCCTTTGGTACTTTTGCCCCA---GCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 | |||||||| | | |||| ||| ||||| | | || || ||| | || ||||| | Sbjct 4289163 CCCCCTTTGGAATTCTTGCACCAACTGCAGA---AAACTTTTCTGGGGTTTTCAAAAACT 4289107 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||| || | | || | ||||| |||||| |||||| ||||| |||| || Sbjct 4289106 CCACAATCTCTTGGAAATCTTGCTTTGCTTCATCAACTCCTGCCACATCGTCAAATGT 4289049 Score = 125 bits (138), Expect = 2e-23 Identities = 338/510 (66%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 |||||| ||||| |||| | ||| || | ||| | || || || ||||| || || Sbjct 26227781 CCTATCGAACCTCCCAGGCCTCAATAAGGCAGAGTCCAGAATGTCTGCCCTGTTAGTAGC 26227840 Query 288909 TGCCAATACAACAATAG-ATTCGGTTTGCTT-AAATCCATCCATACTTGTTAAAATTTGA 288966 ||| | |||| ||| | | ||| ||| ||| || ||||| ||| |||| ||| Sbjct 26227841 TGCAACGACAATGATACCAGT--GTTGCCTTCAAAACCGTCCATTTCTGTCAAAAGTTGG 26227898 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCttt 289024 ||||| || ||||| |||||||||||| |||| |||| | || | ||| | Sbjct 26227899 TTAAGGGTCTGTTCTCTTTCATCATTT---CCTC------CACCA-ATTCCAGTACCTCT 26227948 Query 289025 ttt--tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 || | ||||||||||||||||| |||| || | | || || | ||| | | || Sbjct 26227949 TTGCCTTCCAACAGCATCAATTTCATCAACAAATACAATGCAAGGTGCATTCTCCTTGGC 26228008 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | ||| | || | || || || || |||| ||||||| ||||||||||||| || Sbjct 26228009 CTTCTTAAAAAGATCACGCACTCGAGAAGCACCAACACCAACAAACATTTCTACAAACTC 26228068 Query 289143 AGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 |||| | || | || |||| ||| ||||| || || | |||| | || || || Sbjct 26228069 AGAACCTGAAATGGAAAAAAATGGAACACCAGCTTCTCCAGCAATTGCCTTGGCTAGCAG 26228128 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||||| || ||||| || || || | | |||||||| || || | |||||| | Sbjct 26228129 AGTCTTTCCAGTTCCTGGGGGACCAACAAGAAGAACTCCTTTAGGGATGCGAGCCCCAAC 26228188 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 | | | ||||||| |||| ||||| || || | ||| || || | || || Sbjct 26228189 CGCAGTGAACCTCTCAGGTTTCTTCAAAAACTCCACCACCTCCATAAAGTCCTGCTTGGC 26228248 Query 289323 CTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||| ||| || |||||| |||| || Sbjct 26228249 TTCATCTACTCCAGCAACATCATCAAATGT 26228278 Score = 89.7 bits (98), Expect = 2e-12 Identities = 163/234 (70%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAA--TTG 289087 ||||||||||||| ||| |||||||| || | | | || | || || || || | ||| Sbjct 14458982 CCAACAGCATCAAGTTCATCAATGAATATGATAGAAGGTGCATGTTTCCTTGCTACATTG 14459041 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 ||| | ||||| | || | || || |||||| |||| |||||||||||| | Sbjct 14459042 AAAAGA--TCTCTAATCCGAGCAGCCCCTCTTCCAACAAACATCTCTACAAATTCACTGG 14459099 Query 289148 CGGATAC-TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || |||| |||| ||| |||||| || || ||||| | |||| | ||| Sbjct 14459100 CAGAAACAGTGAA-AAATGGAACACCTGCTTCTCCAGCAACTGCACGGGCCAATAATGTT 14459158 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 || ||||||||||| || ||| | | || || || | |||| ||||| ||| Sbjct 14459159 TTTCCTGTTCCAGGAGGGCCCACCAGTAACACACCTCTGGGTAACTTTGCTCCA 14459212 >seq8 Length=23350829 Score = 116 bits (128), Expect = 1e-20 Identities = 233/342 (68%), Gaps = 4/342 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| ||||| ||| ||||| | |||||| || |||||| ||| | | | | Sbjct 6560968 ATTCCTTACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 6560909 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| || || |||||| ||| || || || || ||||| || ||||| | | |||||| Sbjct 6560908 CTGGATGTATCCAGTTTCAGAAGTCTTCACCGCAGTATCTATAAGACCTTCCCTACCACC 6560849 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| || || | ||| | || || || | | | ||| |||| ||||| Sbjct 6560848 CATTGCATGAAAAAAGAACTCCTGTGGGGTCAGTCCTCGCAGGTATGAGTTCTCTACGAA 6560789 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT- 302776 ||||| || ||| || ||| ||||||||||| || | |||| | ||| || Sbjct 6560788 GCCACGACTTTCTGGCCCATAGTCATCTTTGGTAAAGTGGGGTAATGTCC-GATCT-ATG 6560731 Query 302777 -AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || |||||||| ||||| || ||||| || ||||| |||| || | | ||||||| Sbjct 6560730 AACCCATATGGGATTCGCTTACCCTCAACATTTTGCTGCCCCACACAAGCAGTCATCTGT 6560671 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 || || || | |||||| || || || ||| | |||||| Sbjct 6560670 GAGATGTTAATGAAACTGCCTTTAGATCCTGCAGTAACCATA 6560629 >seq2164 Length=5404 Score = 98.7 bits (108), Expect = 3e-15 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| ||| ||||| ||||| |||||||| | |||||| || | || Sbjct 4105 TACCCTTCCTCTTGCCTCCCCCTTGATCAACATAACGAGCAGTATCATTGAAAACCCTTA 4164 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATAT 156150 |||| |||| ||| ||||| || || ||||| ||||| ||||||| Sbjct 4165 GCATTGGAACAATGCCATTCGATGTCCCATTTGTTCCACGAATAT 4209 >seq2 Length=27986743 Score = 95.1 bits (104), Expect = 4e-14 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| || | | || |||| | ||| || || Sbjct 8634131 ACCAATTGCATCAATCTCATCAATAAACACTATACTAGGAGCACATTGCCTTGCCTCCTG 8634072 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | || || | ||||| ||||| ||||||| |||| || | || || ||| | Sbjct 8634071 AAATAAGTTCCTCACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAATCCGAACC 8634012 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| |||| | ||| | ||| | ||| ||||| ||| | || | ||| |||| Sbjct 8634011 AGATA-TTGACAGGAAAGGCACACCAGATTCCCCTGCAGTTGCTTTTGCTAAAAGGGTCT 8633953 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||| || || || || | || | | || || || | |||||| ||||| | Sbjct 8633952 TTCCTGTGCCTGGAGGGCCAACCAACAATGCACCTTTGGGAATTTTTGCTCCCAGTTC-C 8633894 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | |||||||| |||| | || | || | |||| ||| | ||| | ||||||||| Sbjct 8633893 TCATATTTCTTAGGGTTTTTGAGGAAATGCACAAACTCCATGATTTCTTGCTTTGCCTCA 8633834 Query 289327 TCACATCCTGCTACATCA 289344 ||||| || || |||||| Sbjct 8633833 TCACAGCCAGCAACATCA 8633816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471727290651893